Analysis of interatomic Contacts of Structural Units in PDB entry:
3KRF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KRF entry

There are 4 chains in PDB entry 3KRF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 295
B
 MET 1ALA 259
C
 MET 1ALA 259
D
 MET 1ASN 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 3KRF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 23Right-handed alpha
Helix 2
2
A
28 40Right-handed alpha
Helix 3
3
A
45 58Right-handed alpha
Helix 4
4
A
61 84Right-handed alpha
Helix 5
5
A
99 105Right-handed alpha
Helix 6
6
A
105 128Right-handed alpha
Helix 7
7
A
132 148Right-handed alpha
Helix 8
8
A
151 161Right-handed alpha
Helix 9
9
A
169 181Right-handed alpha
Helix 10
10
A
181 196Right-handed alpha
Helix 11
11
A
199 227Right-handed alpha
Helix 12
12
A
247 272Right-handed alpha
Helix 13
13
A
273 275Right-handed 310
Helix 14
14
A
276 293Right-handed alpha
Helix 15
15
B
1 20Right-handed alpha
Helix 16
16
B
25 39Right-handed alpha
Helix 17
17
B
42 55Right-handed alpha
Helix 18
18
B
58 61Right-handed 310
Helix 19
19
B
62 81Right-handed alpha
Helix 20
20
B
101 123Right-handed alpha
Helix 21
21
B
130 146Right-handed alpha
Helix 22
22
B
150 159Right-handed alpha
Helix 23
23
B
167 179Right-handed alpha
Helix 24
24
B
179 195Right-handed alpha
Helix 25
25
B
197 223Right-handed alpha
Helix 26
26
B
229 241Right-handed alpha
Helix 27
27
B
249 253Right-handed 310
Helix 28
28
C
2 20Right-handed alpha
Helix 29
29
C
25 39Right-handed alpha
Helix 30
30
C
42 56Right-handed alpha
Helix 31
31
C
58 61Right-handed 310
Helix 32
32
C
62 81Right-handed alpha
Helix 33
33
C
101 123Right-handed alpha
Helix 34
34
C
130 146Right-handed alpha
Helix 35
35
C
150 158Right-handed alpha
Helix 36
36
C
159 161Right-handed 310
Helix 37
37
C
167 179Right-handed alpha
Helix 38
38
C
179 195Right-handed alpha
Helix 39
39
C
197 222Right-handed alpha
Helix 40
40
C
228 244Right-handed alpha
Helix 41
41
C
252 259Right-handed alpha
Helix 42
42
D
3 23Right-handed alpha
Helix 43
43
D
28 40Right-handed alpha
Helix 44
44
D
45 58Right-handed alpha
Helix 45
45
D
61 84Right-handed alpha
Helix 46
46
D
99 105Right-handed alpha
Helix 47
47
D
105 128Right-handed alpha
Helix 48
48
D
132 148Right-handed alpha
Helix 49
49
D
151 161Right-handed alpha
Helix 50
50
D
169 181Right-handed alpha
Helix 51
51
D
181 196Right-handed alpha
Helix 52
52
D
199 228Right-handed alpha
Helix 53
53
D
229 234Right-handed alpha
Helix 54
54
D
238 243Right-handed alpha
Helix 55
55
D
247 252Right-handed alpha
Helix 56
56
D
252 272Right-handed alpha
Helix 57
57
D
273 275Right-handed 310
Helix 58
58
D
276 293Right-handed alpha
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There are 2 sheets in PDB entry 3KRF. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
97 98anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
93 94first strand
Strand 2
D
97 98anti-parallel
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