Analysis of interatomic Contacts of Structural Units in PDB entry:
3KRM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KRM entry

There are 3 chains in PDB entry 3KRM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 405GLN 562
B
 GLN 405GLN 562
C
 GLN 405GLN 562
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 3KRM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
416 422Right-handed alpha
Helix 2
2
A
425 436Right-handed alpha
Helix 3
3
A
459 477Right-handed alpha
Helix 4
4
A
498 504Right-handed alpha
Helix 5
5
A
507 518Right-handed alpha
Helix 6
6
A
542 561Right-handed alpha
Helix 7
7
B
416 422Right-handed alpha
Helix 8
8
B
425 435Right-handed alpha
Helix 9
9
B
459 477Right-handed alpha
Helix 10
10
B
498 504Right-handed alpha
Helix 11
11
B
507 518Right-handed alpha
Helix 12
12
B
542 561Right-handed alpha
Helix 13
13
C
416 422Right-handed alpha
Helix 14
14
C
425 436Right-handed alpha
Helix 15
15
C
459 477Right-handed alpha
Helix 16
16
C
498 504Right-handed alpha
Helix 17
17
C
507 518Right-handed alpha
Helix 18
18
C
542 561Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 3KRM. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
438 441first strand
Strand 2
A
451 458anti-parallel
Strand 3
A
406 413anti-parallel
Strand 4
A
488 495anti-parallel
Strand 5
A
534 541anti-parallel
Strand 6
A
520 522anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
438 441first strand
Strand 2
B
451 458anti-parallel
Strand 3
B
406 413anti-parallel
Strand 4
B
488 495anti-parallel
Strand 5
B
534 541anti-parallel
Strand 6
B
520 522anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
438 441first strand
Strand 2
C
451 458anti-parallel
Strand 3
C
406 413anti-parallel
Strand 4
C
488 495anti-parallel
Strand 5
C
534 541anti-parallel
Strand 6
C
520 522anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il