Analysis of interatomic Contacts of Structural Units in PDB entry:
3KRZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KRZ entry

There are 4 chains in PDB entry 3KRZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LYS 336
B
 ILE 3LYS 336
C
 ILE 3LYS 336
D
 SER 2LYS 336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 62 helices in PDB entry 3KRZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 6Right-handed 310
Helix 2
2
A
36 49Right-handed alpha
Helix 3
3
A
62 66Right-handed 310
Helix 4
4
A
76 93Right-handed alpha
Helix 5
5
A
104 108Right-handed 310
Helix 6
6
A
134 156Right-handed alpha
Helix 7
7
A
168 175Right-handed alpha
Helix 8
8
A
188 193Right-handed alpha
Helix 9
9
A
193 206Right-handed alpha
Helix 10
10
A
228 240Right-handed alpha
Helix 11
11
A
265 277Right-handed alpha
Helix 12
12
A
288 298Right-handed alpha
Helix 13
13
A
307 313Right-handed alpha
Helix 14
14
A
315 321Right-handed alpha
Helix 15
15
A
323 327Right-handed 310
Helix 16
16
A
328 335Right-handed 310
Helix 17
17
B
36 49Right-handed alpha
Helix 18
18
B
62 66Right-handed 310
Helix 19
19
B
76 93Right-handed alpha
Helix 20
20
B
104 108Right-handed 310
Helix 21
21
B
134 156Right-handed alpha
Helix 22
22
B
168 175Right-handed alpha
Helix 23
23
B
188 206Right-handed alpha
Helix 24
24
B
228 240Right-handed alpha
Helix 25
25
B
265 277Right-handed alpha
Helix 26
26
B
288 298Right-handed alpha
Helix 27
27
B
307 313Right-handed alpha
Helix 28
28
B
315 320Right-handed alpha
Helix 29
29
B
323 327Right-handed 310
Helix 30
30
B
328 335Right-handed 310
Helix 31
31
C
36 49Right-handed alpha
Helix 32
32
C
62 66Right-handed 310
Helix 33
33
C
76 78Right-handed 310
Helix 34
34
C
79 93Right-handed alpha
Helix 35
35
C
104 108Right-handed 310
Helix 36
36
C
134 156Right-handed alpha
Helix 37
37
C
168 175Right-handed alpha
Helix 38
38
C
188 193Right-handed alpha
Helix 39
39
C
193 206Right-handed alpha
Helix 40
40
C
228 240Right-handed alpha
Helix 41
41
C
265 277Right-handed alpha
Helix 42
42
C
288 298Right-handed alpha
Helix 43
43
C
307 313Right-handed alpha
Helix 44
44
C
315 321Right-handed alpha
Helix 45
45
C
323 327Right-handed 310
Helix 46
46
C
328 335Right-handed 310
Helix 47
47
D
2 6Right-handed 310
Helix 48
48
D
36 49Right-handed alpha
Helix 49
49
D
62 66Right-handed 310
Helix 50
50
D
79 93Right-handed alpha
Helix 51
51
D
104 108Right-handed 310
Helix 52
52
D
134 156Right-handed alpha
Helix 53
53
D
168 175Right-handed alpha
Helix 54
54
D
188 193Right-handed alpha
Helix 55
55
D
193 206Right-handed alpha
Helix 56
56
D
228 240Right-handed alpha
Helix 57
57
D
265 277Right-handed alpha
Helix 58
58
D
288 298Right-handed alpha
Helix 59
59
D
307 313Right-handed alpha
Helix 60
60
D
315 321Right-handed alpha
Helix 61
61
D
323 327Right-handed 310
Helix 62
62
D
328 335Right-handed 310
Back to top of page

There are 12 sheets in PDB entry 3KRZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
13 15anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 21first strand
Strand 2
A
53 60parallel
Strand 3
A
96 102parallel
Strand 4
A
159 164parallel
Strand 5
A
213 218parallel
Strand 6
A
245 249parallel
Strand 7
A
279 282parallel
Strand 8
A
303 306parallel
Strand 9
A
19 21parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
131 132parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 10first strand
Strand 2
B
13 15anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 21first strand
Strand 2
B
53 60parallel
Strand 3
B
96 102parallel
Strand 4
B
159 164parallel
Strand 5
B
213 218parallel
Strand 6
B
245 249parallel
Strand 7
B
279 283parallel
Strand 8
B
303 306parallel
Strand 9
B
19 21parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 117first strand
Strand 2
B
131 132parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 10first strand
Strand 2
C
13 15anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
19 21first strand
Strand 2
C
53 60parallel
Strand 3
C
96 102parallel
Strand 4
C
159 164parallel
Strand 5
C
213 218parallel
Strand 6
C
245 249parallel
Strand 7
C
279 282parallel
Strand 8
C
303 306parallel
Strand 9
C
19 21parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
116 117first strand
Strand 2
C
131 132parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 10first strand
Strand 2
D
13 15anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
19 21first strand
Strand 2
D
53 60parallel
Strand 3
D
96 102parallel
Strand 4
D
159 164parallel
Strand 5
D
213 218parallel
Strand 6
D
245 249parallel
Strand 7
D
279 282parallel
Strand 8
D
303 306parallel
Strand 9
D
19 21parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
116 117first strand
Strand 2
D
131 132parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il