Analysis of interatomic Contacts of Structural Units in PDB entry:
3KS5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KS5 entry

There are 2 chains in PDB entry 3KS5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0GLU 246
B
 GLY 0ALA 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 3KS5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 15Right-handed alpha
Helix 2
2
A
18 27Right-handed alpha
Helix 3
3
A
62 66Right-handed 310
Helix 4
4
A
67 74Right-handed alpha
Helix 5
5
A
86 96Right-handed alpha
Helix 6
6
A
116 128Right-handed alpha
Helix 7
7
A
130 132Right-handed 310
Helix 8
8
A
140 151Right-handed alpha
Helix 9
9
A
160 179Right-handed alpha
Helix 10
10
A
189 191Right-handed 310
Helix 11
11
A
192 202Right-handed alpha
Helix 12
12
A
213 224Right-handed alpha
Helix 13
13
A
232 246Right-handed alpha
Helix 14
14
B
10 15Right-handed alpha
Helix 15
15
B
18 27Right-handed alpha
Helix 16
16
B
62 66Right-handed 310
Helix 17
17
B
67 72Right-handed alpha
Helix 18
18
B
87 95Right-handed alpha
Helix 19
19
B
116 128Right-handed alpha
Helix 20
20
B
130 132Right-handed 310
Helix 21
21
B
140 151Right-handed alpha
Helix 22
22
B
160 168Right-handed alpha
Helix 23
23
B
168 179Right-handed alpha
Helix 24
24
B
189 191Right-handed 310
Helix 25
25
B
192 202Right-handed alpha
Helix 26
26
B
213 224Right-handed alpha
Helix 27
27
B
232 247Right-handed alpha
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There are 2 sheets in PDB entry 3KS5. Click on sheet of interest to get list of strands forming it: A, B,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 47first strand
Strand 2
A
32 39anti-parallel
Strand 3
A
100 105parallel
Strand 4
A
134 138parallel
Strand 5
A
155 159parallel
Strand 6
A
183 187parallel
Strand 7
A
205 209parallel
Strand 8
A
227 230parallel
Strand 9
A
3 7parallel
Strand 10
A
32 39parallel
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There are 11 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 86first strand
Strand 2
B
45 47anti-parallel
Strand 3
B
32 39anti-parallel
Strand 4
B
100 105parallel
Strand 5
B
134 138parallel
Strand 6
B
155 159parallel
Strand 7
B
183 187parallel
Strand 8
B
205 209parallel
Strand 9
B
227 230parallel
Strand 10
B
3 7parallel
Strand 11
B
32 39parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il