Analysis of interatomic Contacts of Structural Units in PDB entry:
3KS8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KS8 entry

There are 6 chains in PDB entry 3KS8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 A 1 A 18
F
 U 1 U 18
A
 ILE 208ILE 329
B
 PRO 206ILE 329
C
 ILE 208ILE 329
D
 PRO 206ILE 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3KS8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
209 219Right-handed alpha
Helix 2
2
A
226 243Right-handed alpha
Helix 3
3
A
244 258Right-handed alpha
Helix 4
4
A
261 273Right-handed alpha
Helix 5
5
A
274 278Right-handed 310
Helix 6
6
A
288 292Right-handed 310
Helix 7
7
A
293 298Right-handed 310
Helix 8
8
A
308 311Right-handed 310
Helix 9
9
B
209 221Right-handed alpha
Helix 10
10
B
226 242Right-handed alpha
Helix 11
11
B
244 258Right-handed alpha
Helix 12
12
B
261 273Right-handed alpha
Helix 13
13
B
274 278Right-handed 310
Helix 14
14
B
288 292Right-handed 310
Helix 15
15
B
293 298Right-handed 310
Helix 16
16
B
308 311Right-handed 310
Helix 17
17
C
209 219Right-handed alpha
Helix 18
18
C
226 243Right-handed alpha
Helix 19
19
C
244 258Right-handed alpha
Helix 20
20
C
261 273Right-handed alpha
Helix 21
21
C
274 278Right-handed 310
Helix 22
22
C
288 292Right-handed 310
Helix 23
23
C
293 298Right-handed 310
Helix 24
24
C
308 311Right-handed 310
Helix 25
25
D
209 221Right-handed alpha
Helix 26
26
D
226 242Right-handed alpha
Helix 27
27
D
244 258Right-handed alpha
Helix 28
28
D
261 273Right-handed alpha
Helix 29
29
D
274 278Right-handed 310
Helix 30
30
D
288 292Right-handed 310
Helix 31
31
D
293 298Right-handed alpha
Helix 32
32
D
308 311Right-handed 310
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There are 4 sheets in PDB entry 3KS8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 285first strand
Strand 2
A
313 318parallel
Strand 3
A
324 328anti-parallel
Strand 4
A
300 301anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 285first strand
Strand 2
B
313 318parallel
Strand 3
B
324 328anti-parallel
Strand 4
B
300 301anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
283 285first strand
Strand 2
C
313 318parallel
Strand 3
C
324 328anti-parallel
Strand 4
C
300 301anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
283 285first strand
Strand 2
D
313 318parallel
Strand 3
D
324 328anti-parallel
Strand 4
D
300 301anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il