Analysis of interatomic Contacts of Structural Units in PDB entry:
3KSW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KSW entry

There is 1 chain in PDB entry 3KSW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 30LYS 477
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3KSW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 50Right-handed alpha
Helix 2
2
A
51 63Right-handed alpha
Helix 3
3
A
71 75Right-handed 310
Helix 4
4
A
82 85Right-handed 310
Helix 5
5
A
86 91Right-handed alpha
Helix 6
6
A
105 111Right-handed alpha
Helix 7
7
A
119 134Right-handed alpha
Helix 8
8
A
135 139Right-handed 310
Helix 9
9
A
142 158Right-handed alpha
Helix 10
10
A
167 184Right-handed alpha
Helix 11
11
A
185 192Right-handed alpha
Helix 12
12
A
193 207Right-handed alpha
Helix 13
13
A
223 252Right-handed alpha
Helix 14
14
A
260 268Right-handed alpha
Helix 15
15
A
277 308Right-handed alpha
Helix 16
16
A
313 321Right-handed alpha
Helix 17
17
A
331 337Right-handed alpha
Helix 18
18
A
339 353Right-handed alpha
Helix 19
19
A
383 388Right-handed alpha
Helix 20
20
A
424 441Right-handed alpha
Helix 21
21
A
465 468Right-handed 310
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There are 4 sheets in PDB entry 3KSW. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 69first strand
Strand 2
A
77 80anti-parallel
Strand 3
A
379 382parallel
Strand 4
A
359 363anti-parallel
Strand 5
A
97 98anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 166first strand
Strand 2
A
470 475anti-parallel
Strand 3
A
443 447anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
367 369first strand
Strand 2
A
372 374anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
416 417first strand
Strand 2
A
420 421anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il