Analysis of interatomic Contacts of Structural Units in PDB entry:
3KUM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3KUM entry

There are 8 chains in PDB entry 3KUM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	HIS 354
B	MET 1	SER 353
C	MET 1	HIS 354
D	MET 1	HIS 354
E	MET 1	HIS 354
F	MET 1	HIS 354
G	MET 1	HIS 354
H	MET 1	SER 353

There are111 helices in PDB entry 3KUM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	58	73	Right-handed alpha
Helix 2	2	A	80	92	Right-handed alpha
Helix 3	3	A	95	115	Right-handed alpha
Helix 4	4	A	117	121	Right-handed 310
Helix 5	5	A	139	153	Right-handed alpha
Helix 6	6	A	165	181	Right-handed alpha
Helix 7	7	A	195	206	Right-handed alpha
Helix 8	8	A	207	210	Right-handed 310
Helix 9	9	A	222	233	Right-handed alpha
Helix 10	10	A	245	256	Right-handed alpha
Helix 11	11	A	264	269	Right-handed alpha
Helix 12	12	A	270	284	Right-handed alpha
Helix 13	13	A	297	311	Right-handed alpha
Helix 14	14	A	320	325	Right-handed 310
Helix 15	15	B	51	56	Right-handed alpha
Helix 16	16	B	58	71	Right-handed alpha
Helix 17	17	B	80	92	Right-handed alpha
Helix 18	18	B	95	115	Right-handed alpha
Helix 19	19	B	117	122	Right-handed alpha
Helix 20	20	B	139	153	Right-handed alpha
Helix 21	21	B	165	181	Right-handed alpha
Helix 22	22	B	195	206	Right-handed alpha
Helix 23	23	B	207	209	Right-handed 310
Helix 24	24	B	222	233	Right-handed alpha
Helix 25	25	B	245	256	Right-handed alpha
Helix 26	26	B	264	269	Right-handed alpha
Helix 27	27	B	270	284	Right-handed alpha
Helix 28	28	B	297	311	Right-handed alpha
Helix 29	29	B	320	325	Right-handed 310
Helix 30	30	C	58	73	Right-handed alpha
Helix 31	31	C	80	92	Right-handed alpha
Helix 32	32	C	95	115	Right-handed alpha
Helix 33	33	C	117	122	Right-handed alpha
Helix 34	34	C	139	153	Right-handed alpha
Helix 35	35	C	165	181	Right-handed alpha
Helix 36	36	C	195	206	Right-handed alpha
Helix 37	37	C	207	209	Right-handed 310
Helix 38	38	C	222	233	Right-handed alpha
Helix 39	39	C	245	256	Right-handed alpha
Helix 40	40	C	264	269	Right-handed alpha
Helix 41	41	C	270	285	Right-handed alpha
Helix 42	42	C	297	311	Right-handed alpha
Helix 43	43	C	320	325	Right-handed 310
Helix 44	44	D	58	74	Right-handed alpha
Helix 45	45	D	80	92	Right-handed alpha
Helix 46	46	D	95	115	Right-handed alpha
Helix 47	47	D	117	122	Right-handed alpha
Helix 48	48	D	139	152	Right-handed alpha
Helix 49	49	D	165	181	Right-handed alpha
Helix 50	50	D	195	206	Right-handed alpha
Helix 51	51	D	207	210	Right-handed 310
Helix 52	52	D	222	233	Right-handed alpha
Helix 53	53	D	245	256	Right-handed alpha
Helix 54	54	D	264	269	Right-handed alpha
Helix 55	55	D	270	284	Right-handed alpha
Helix 56	56	D	297	311	Right-handed alpha
Helix 57	57	E	58	73	Right-handed alpha
Helix 58	58	E	80	92	Right-handed alpha
Helix 59	59	E	95	115	Right-handed alpha
Helix 60	60	E	117	122	Right-handed alpha
Helix 61	61	E	139	153	Right-handed alpha
Helix 62	62	E	165	181	Right-handed alpha
Helix 63	63	E	195	206	Right-handed alpha
Helix 64	64	E	207	209	Right-handed 310
Helix 65	65	E	222	233	Right-handed alpha
Helix 66	66	E	245	256	Right-handed alpha
Helix 67	67	E	264	269	Right-handed alpha
Helix 68	68	E	270	285	Right-handed alpha
Helix 69	69	E	297	311	Right-handed alpha
Helix 70	70	E	320	325	Right-handed 310
Helix 71	71	F	58	74	Right-handed alpha
Helix 72	72	F	80	92	Right-handed alpha
Helix 73	73	F	95	114	Right-handed alpha
Helix 74	74	F	117	122	Right-handed alpha
Helix 75	75	F	139	152	Right-handed alpha
Helix 76	76	F	165	181	Right-handed alpha
Helix 77	77	F	195	206	Right-handed alpha
Helix 78	78	F	207	210	Right-handed 310
Helix 79	79	F	222	233	Right-handed alpha
Helix 80	80	F	245	256	Right-handed alpha
Helix 81	81	F	264	269	Right-handed alpha
Helix 82	82	F	270	284	Right-handed alpha
Helix 83	83	F	297	311	Right-handed alpha
Helix 84	84	G	58	73	Right-handed alpha
Helix 85	85	G	80	92	Right-handed alpha
Helix 86	86	G	95	115	Right-handed alpha
Helix 87	87	G	117	122	Right-handed alpha
Helix 88	88	G	139	154	Right-handed alpha
Helix 89	89	G	165	181	Right-handed alpha
Helix 90	90	G	195	206	Right-handed alpha
Helix 91	91	G	222	231	Right-handed alpha
Helix 92	92	G	245	256	Right-handed alpha
Helix 93	93	G	264	269	Right-handed alpha
Helix 94	94	G	270	284	Right-handed alpha
Helix 95	95	G	297	311	Right-handed alpha
Helix 96	96	G	320	325	Right-handed 310
Helix 97	97	H	51	56	Right-handed alpha
Helix 98	98	H	58	73	Right-handed alpha
Helix 99	99	H	80	92	Right-handed alpha
Helix 100	100	H	95	115	Right-handed alpha
Helix 101	101	H	117	122	Right-handed alpha
Helix 102	102	H	139	153	Right-handed alpha
Helix 103	103	H	165	181	Right-handed alpha
Helix 104	104	H	195	206	Right-handed alpha
Helix 105	105	H	207	209	Right-handed 310
Helix 106	106	H	222	231	Right-handed alpha
Helix 107	107	H	245	256	Right-handed alpha
Helix 108	108	H	264	269	Right-handed alpha
Helix 109	109	H	270	284	Right-handed alpha
Helix 110	110	H	297	311	Right-handed alpha
Helix 111	111	H	320	325	Right-handed 310

There are 30 sheets in PDB entry 3KUM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	21	first strand
Strand 2	A	24	38	anti-parallel
Strand 3	A	43	48	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	130	first strand
Strand 2	A	341	343	anti-parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	135	first strand
Strand 2	A	157	161	parallel
Strand 3	A	185	189	parallel
Strand 4	A	213	215	parallel
Strand 5	A	236	239	parallel
Strand 6	A	260	263	parallel
Strand 7	A	287	290	parallel
Strand 8	A	314	317	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	332	first strand
Strand 2	A	352	353	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	21	first strand
Strand 2	B	24	38	anti-parallel
Strand 3	B	43	48	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	341	343	anti-parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	135	first strand
Strand 2	B	157	161	parallel
Strand 3	B	185	189	parallel
Strand 4	B	211	215	parallel
Strand 5	B	236	239	parallel
Strand 6	B	260	263	parallel
Strand 7	B	287	290	parallel
Strand 8	B	314	317	parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	21	first strand
Strand 2	C	24	38	anti-parallel
Strand 3	C	43	48	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	130	first strand
Strand 2	C	341	343	anti-parallel

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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	135	first strand
Strand 2	C	157	161	parallel
Strand 3	C	185	189	parallel
Strand 4	C	211	215	parallel
Strand 5	C	236	239	parallel
Strand 6	C	260	263	parallel
Strand 7	C	287	290	parallel
Strand 8	C	314	317	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	332	first strand
Strand 2	C	352	353	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	21	first strand
Strand 2	D	24	38	anti-parallel
Strand 3	D	43	48	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	130	first strand
Strand 2	D	341	343	anti-parallel

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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	135	first strand
Strand 2	D	157	161	parallel
Strand 3	D	185	189	parallel
Strand 4	D	213	215	parallel
Strand 5	D	236	239	parallel
Strand 6	D	260	263	parallel
Strand 7	D	287	290	parallel
Strand 8	D	314	317	parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	331	332	first strand
Strand 2	D	352	353	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	21	first strand
Strand 2	E	24	38	anti-parallel
Strand 3	E	43	48	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	130	first strand
Strand 2	E	341	343	anti-parallel

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There are 8 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	133	135	first strand
Strand 2	E	157	161	parallel
Strand 3	E	185	189	parallel
Strand 4	E	211	215	parallel
Strand 5	E	236	239	parallel
Strand 6	E	260	263	parallel
Strand 7	E	287	290	parallel
Strand 8	E	314	317	parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	331	332	first strand
Strand 2	E	352	353	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	21	first strand
Strand 2	F	24	38	anti-parallel
Strand 3	F	43	48	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	128	130	first strand
Strand 2	F	341	343	anti-parallel

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There are 8 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	133	135	first strand
Strand 2	F	157	161	parallel
Strand 3	F	185	189	parallel
Strand 4	F	213	215	parallel
Strand 5	F	236	239	parallel
Strand 6	F	260	263	parallel
Strand 7	F	287	290	parallel
Strand 8	F	314	317	parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	331	332	first strand
Strand 2	F	352	353	anti-parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	21	first strand
Strand 2	G	24	38	anti-parallel
Strand 3	G	43	48	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	128	130	first strand
Strand 2	G	341	343	anti-parallel

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There are 8 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	133	135	first strand
Strand 2	G	157	161	parallel
Strand 3	G	185	189	parallel
Strand 4	G	213	215	parallel
Strand 5	G	236	239	parallel
Strand 6	G	260	263	parallel
Strand 7	G	287	290	parallel
Strand 8	G	314	317	parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	331	332	first strand
Strand 2	G	352	353	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	21	first strand
Strand 2	H	24	38	anti-parallel
Strand 3	H	43	48	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	130	first strand
Strand 2	H	341	343	anti-parallel

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There are 8 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	133	135	first strand
Strand 2	H	157	161	parallel
Strand 3	H	185	189	parallel
Strand 4	H	211	215	parallel
Strand 5	H	236	239	parallel
Strand 6	H	260	263	parallel
Strand 7	H	287	290	parallel
Strand 8	H	314	317	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3KUM

Analysis of interatomic Contacts of Structural Units in PDB entry:
3KUM