Analysis of interatomic Contacts of Structural Units in PDB entry:
3KUX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KUX entry

There is 1 chain in PDB entry 3KUX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2ASN 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 3KUX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 19Right-handed alpha
Helix 2
2
A
19 26Right-handed alpha
Helix 3
3
A
39 45Right-handed alpha
Helix 4
4
A
55 62Right-handed alpha
Helix 5
5
A
76 87Right-handed alpha
Helix 6
6
A
100 114Right-handed alpha
Helix 7
7
A
122 126Right-handed 310
Helix 8
8
A
127 140Right-handed alpha
Helix 9
9
A
172 190Right-handed alpha
Helix 10
10
A
254 261Right-handed alpha
Helix 11
11
A
299 311Right-handed alpha
Helix 12
12
A
319 340Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3KUX. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
30 36parallel
Strand 3
A
5 10parallel
Strand 4
A
67 70parallel
Strand 5
A
90 93parallel
Strand 6
A
118 120parallel
Back to list of sheets
Back to top of page

There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 292first strand
Strand 2
A
277 282anti-parallel
Strand 3
A
245 249anti-parallel
Strand 4
A
238 242anti-parallel
Strand 5
A
145 153anti-parallel
Strand 6
A
221 228parallel
Strand 7
A
211 218anti-parallel
Strand 8
A
194 200anti-parallel
Strand 9
A
343 344anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il