Analysis of interatomic Contacts of Structural Units in PDB entry:
3KV5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KV5 entry

There are 2 chains in PDB entry 3KV5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 PRO 32ASN 479
A
 PRO 33ASN 479
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 3KV5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
D
64 68Right-handed alpha
Helix 2
2
D
70 75Right-handed 310
Helix 3
3
D
82 90Right-handed alpha
Helix 4
4
D
119 129Right-handed alpha
Helix 5
5
D
133 137Right-handed 310
Helix 6
6
D
142 146Right-handed 310
Helix 7
7
D
147 155Right-handed alpha
Helix 8
8
D
178 187Right-handed alpha
Helix 9
9
D
207 216Right-handed alpha
Helix 10
10
D
233 239Right-handed 310
Helix 11
11
D
242 249Right-handed alpha
Helix 12
12
D
249 255Right-handed alpha
Helix 13
13
D
284 288Right-handed 310
Helix 14
14
D
307 319Right-handed alpha
Helix 15
15
D
322 326Right-handed 310
Helix 16
16
D
327 331Right-handed 310
Helix 17
17
D
374 388Right-handed alpha
Helix 18
18
D
398 419Right-handed alpha
Helix 19
19
D
425 442Right-handed alpha
Helix 20
20
D
451 455Right-handed 310
Helix 21
21
D
462 479Right-handed alpha
Helix 22
22
A
64 68Right-handed alpha
Helix 23
23
A
73 75Right-handed 310
Helix 24
24
A
82 90Right-handed alpha
Helix 25
25
A
119 129Right-handed alpha
Helix 26
26
A
133 137Right-handed 310
Helix 27
27
A
147 155Right-handed alpha
Helix 28
28
A
178 187Right-handed alpha
Helix 29
29
A
207 216Right-handed alpha
Helix 30
30
A
233 239Right-handed 310
Helix 31
31
A
242 249Right-handed alpha
Helix 32
32
A
249 255Right-handed alpha
Helix 33
33
A
284 288Right-handed 310
Helix 34
34
A
307 319Right-handed alpha
Helix 35
35
A
322 326Right-handed 310
Helix 36
36
A
327 331Right-handed 310
Helix 37
37
A
374 388Right-handed alpha
Helix 38
38
A
391 395Right-handed 310
Helix 39
39
A
398 419Right-handed alpha
Helix 40
40
A
425 444Right-handed alpha
Helix 41
41
A
444 449Right-handed alpha
Helix 42
42
A
460 476Right-handed alpha
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There are 9 sheets in PDB entry 3KV5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
38 39first strand
Strand 2
D
44 45anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
52 54first strand
Strand 2
D
61 63anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
77 79first strand
Strand 2
D
93 94anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
139 140first strand
Strand 2
D
160 162parallel
Strand 3
D
345 348anti-parallel
Strand 4
D
289 304anti-parallel
Strand 5
D
353 369anti-parallel
Strand 6
D
278 282anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
202 206first strand
Strand 2
D
191 196anti-parallel
Strand 3
D
223 229anti-parallel
Strand 4
D
269 273anti-parallel
Strand 5
D
353 369anti-parallel
Strand 6
D
289 304anti-parallel
Strand 7
D
336 341anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 54first strand
Strand 2
A
61 63anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
93 94anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
160 162parallel
Strand 3
A
345 348anti-parallel
Strand 4
A
289 304anti-parallel
Strand 5
A
353 369anti-parallel
Strand 6
A
278 282anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 206first strand
Strand 2
A
191 196anti-parallel
Strand 3
A
223 229anti-parallel
Strand 4
A
269 273anti-parallel
Strand 5
A
353 369anti-parallel
Strand 6
A
289 304anti-parallel
Strand 7
A
336 341anti-parallel
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