Analysis of interatomic Contacts of Structural Units in PDB entry:
3KVB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KVB entry

There is 1 chain in PDB entry 3KVB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 114ASN 479
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3KVB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
119 129Right-handed alpha
Helix 2
2
A
133 137Right-handed 310
Helix 3
3
A
147 155Right-handed alpha
Helix 4
4
A
178 187Right-handed alpha
Helix 5
5
A
207 215Right-handed alpha
Helix 6
6
A
233 239Right-handed 310
Helix 7
7
A
242 249Right-handed alpha
Helix 8
8
A
249 255Right-handed alpha
Helix 9
9
A
284 288Right-handed 310
Helix 10
10
A
307 319Right-handed alpha
Helix 11
11
A
320 326Right-handed 310
Helix 12
12
A
327 332Right-handed 310
Helix 13
13
A
374 389Right-handed alpha
Helix 14
14
A
390 395Right-handed 310
Helix 15
15
A
398 419Right-handed alpha
Helix 16
16
A
425 444Right-handed alpha
Helix 17
17
A
447 455Right-handed 310
Helix 18
18
A
460 478Right-handed alpha
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There are 2 sheets in PDB entry 3KVB. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
160 162parallel
Strand 3
A
345 348anti-parallel
Strand 4
A
289 304anti-parallel
Strand 5
A
353 369anti-parallel
Strand 6
A
278 282anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 206first strand
Strand 2
A
191 196anti-parallel
Strand 3
A
223 229anti-parallel
Strand 4
A
269 273anti-parallel
Strand 5
A
353 369anti-parallel
Strand 6
A
289 304anti-parallel
Strand 7
A
336 340anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il