Analysis of interatomic Contacts of Structural Units in PDB entry:
3KVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KVD entry

There is 1 chain in PDB entry 3KVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 ALA 79GLN 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 3KVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
D
80 87Right-handed alpha
Helix 2
2
D
129 133Right-handed 310
Helix 3
3
D
205 209Right-handed 310
Helix 4
4
D
251 255Right-handed 310
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There are 3 sheets in PDB entry 3KVD. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
99 100first strand
Strand 2
D
127 128anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
118 122first strand
Strand 2
D
110 115anti-parallel
Strand 3
D
138 149anti-parallel
Strand 4
D
152 165anti-parallel
Strand 5
D
169 180anti-parallel
Strand 6
D
188 201anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
214 223first strand
Strand 2
D
226 236anti-parallel
Strand 3
D
241 247anti-parallel
Strand 4
D
257 265anti-parallel
Strand 5
D
271 279anti-parallel
Strand 6
D
282 292anti-parallel
Strand 7
D
298 307anti-parallel
Strand 8
D
310 319anti-parallel
Strand 9
D
214 223anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il