Analysis of interatomic Contacts of Structural Units in PDB entry:
3KVG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KVG entry

There are 2 chains in PDB entry 3KVG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 19GLY 399
B
 GLY 19GLU 400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 3KVG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
67 73Right-handed alpha
Helix 2
2
A
84 88Right-handed 310
Helix 3
3
A
95 103Right-handed alpha
Helix 4
4
A
113 115Right-handed 310
Helix 5
5
A
131 152Right-handed alpha
Helix 6
6
A
167 181Right-handed alpha
Helix 7
7
A
191 199Right-handed alpha
Helix 8
8
A
200 204Right-handed 310
Helix 9
9
A
245 265Right-handed alpha
Helix 10
10
A
269 272Right-handed 310
Helix 11
11
A
273 291Right-handed alpha
Helix 12
12
A
316 323Right-handed alpha
Helix 13
13
A
323 329Right-handed alpha
Helix 14
14
A
330 341Right-handed alpha
Helix 15
15
A
344 348Right-handed 310
Helix 16
16
A
355 359Right-handed 310
Helix 17
17
A
360 371Right-handed alpha
Helix 18
18
A
384 399Right-handed alpha
Helix 19
19
B
67 72Right-handed alpha
Helix 20
20
B
84 88Right-handed 310
Helix 21
21
B
95 103Right-handed alpha
Helix 22
22
B
113 115Right-handed 310
Helix 23
23
B
131 152Right-handed alpha
Helix 24
24
B
167 181Right-handed alpha
Helix 25
25
B
191 199Right-handed alpha
Helix 26
26
B
200 204Right-handed 310
Helix 27
27
B
245 265Right-handed alpha
Helix 28
28
B
269 272Right-handed 310
Helix 29
29
B
273 291Right-handed alpha
Helix 30
30
B
316 323Right-handed alpha
Helix 31
31
B
323 329Right-handed alpha
Helix 32
32
B
331 341Right-handed alpha
Helix 33
33
B
344 348Right-handed 310
Helix 34
34
B
355 359Right-handed 310
Helix 35
35
B
360 371Right-handed alpha
Helix 36
36
B
384 399Right-handed alpha
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There are 12 sheets in PDB entry 3KVG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 43first strand
Strand 2
A
30 37anti-parallel
Strand 3
A
53 54anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 43first strand
Strand 2
A
30 37anti-parallel
Strand 3
A
22 26anti-parallel
Strand 4
A
157 162parallel
Strand 5
A
184 190parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
57 59anti-parallel
Strand 3
A
81 82anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 111first strand
Strand 2
A
117 123anti-parallel
Strand 3
A
126 130anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 241first strand
Strand 2
A
221 229anti-parallel
Strand 3
A
209 216anti-parallel
Strand 4
A
350 354parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 305first strand
Strand 2
A
308 315anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 43first strand
Strand 2
B
30 37anti-parallel
Strand 3
B
53 54anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 43first strand
Strand 2
B
30 37anti-parallel
Strand 3
B
21 26anti-parallel
Strand 4
B
157 162parallel
Strand 5
B
184 190parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 66first strand
Strand 2
B
57 59anti-parallel
Strand 3
B
81 82anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 111first strand
Strand 2
B
117 123anti-parallel
Strand 3
B
126 130anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 241first strand
Strand 2
B
221 229anti-parallel
Strand 3
B
209 216anti-parallel
Strand 4
B
350 354parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
296 305first strand
Strand 2
B
308 315anti-parallel
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