Analysis of interatomic Contacts of Structural Units in PDB entry:
3KWV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3KWV entry

There are 6 chains in PDB entry 3KWV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 174	GLY 735
B	THR 174	GLY 735
C	ASN 29	GLN 250
D	THR 174	GLY 735
E	THR 174	GLY 735
F	ASN 29	GLN 250

There are 81 helices in PDB entry 3KWV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	184	191	Right-handed alpha
Helix 2	2	A	207	212	Right-handed alpha
Helix 3	3	A	234	241	Right-handed alpha
Helix 4	4	A	248	253	Right-handed 310
Helix 5	5	A	345	351	Right-handed alpha
Helix 6	6	A	435	446	Right-handed alpha
Helix 7	7	A	480	487	Right-handed alpha
Helix 8	8	A	512	517	Right-handed alpha
Helix 9	9	A	522	532	Right-handed alpha
Helix 10	10	A	555	569	Right-handed alpha
Helix 11	11	A	573	577	Right-handed 310
Helix 12	12	A	608	617	Right-handed alpha
Helix 13	13	A	632	637	Right-handed alpha
Helix 14	14	A	679	682	Right-handed 310
Helix 15	15	A	704	706	Right-handed 310
Helix 16	16	B	184	191	Right-handed alpha
Helix 17	17	B	207	215	Right-handed alpha
Helix 18	18	B	234	241	Right-handed alpha
Helix 19	19	B	248	253	Right-handed 310
Helix 20	20	B	345	351	Right-handed alpha
Helix 21	21	B	435	446	Right-handed alpha
Helix 22	22	B	480	487	Right-handed alpha
Helix 23	23	B	522	532	Right-handed alpha
Helix 24	24	B	555	569	Right-handed alpha
Helix 25	25	B	573	577	Right-handed 310
Helix 26	26	B	608	618	Right-handed alpha
Helix 27	27	B	704	706	Right-handed 310
Helix 28	28	C	31	44	Right-handed alpha
Helix 29	29	C	50	66	Right-handed alpha
Helix 30	30	C	67	77	Right-handed alpha
Helix 31	31	C	98	101	Right-handed 310
Helix 32	32	C	115	117	Right-handed 310
Helix 33	33	C	134	139	Right-handed 310
Helix 34	34	C	140	157	Right-handed alpha
Helix 35	35	C	167	179	Right-handed alpha
Helix 36	36	C	183	190	Right-handed alpha
Helix 37	37	C	204	209	Right-handed alpha
Helix 38	38	C	209	226	Right-handed alpha
Helix 39	39	C	226	237	Right-handed alpha
Helix 40	40	C	237	250	Right-handed alpha
Helix 41	41	D	184	191	Right-handed alpha
Helix 42	42	D	207	212	Right-handed alpha
Helix 43	43	D	234	241	Right-handed alpha
Helix 44	44	D	248	253	Right-handed 310
Helix 45	45	D	345	351	Right-handed alpha
Helix 46	46	D	435	446	Right-handed alpha
Helix 47	47	D	480	487	Right-handed alpha
Helix 48	48	D	512	517	Right-handed alpha
Helix 49	49	D	522	532	Right-handed alpha
Helix 50	50	D	555	569	Right-handed alpha
Helix 51	51	D	573	577	Right-handed 310
Helix 52	52	D	608	617	Right-handed alpha
Helix 53	53	D	632	637	Right-handed alpha
Helix 54	54	D	679	682	Right-handed 310
Helix 55	55	D	704	706	Right-handed 310
Helix 56	56	E	184	191	Right-handed alpha
Helix 57	57	E	207	215	Right-handed alpha
Helix 58	58	E	234	241	Right-handed alpha
Helix 59	59	E	248	253	Right-handed 310
Helix 60	60	E	345	351	Right-handed alpha
Helix 61	61	E	435	446	Right-handed alpha
Helix 62	62	E	480	487	Right-handed alpha
Helix 63	63	E	514	518	Right-handed 310
Helix 64	64	E	522	532	Right-handed alpha
Helix 65	65	E	555	569	Right-handed alpha
Helix 66	66	E	573	577	Right-handed 310
Helix 67	67	E	608	618	Right-handed alpha
Helix 68	68	E	704	706	Right-handed 310
Helix 69	69	F	31	44	Right-handed alpha
Helix 70	70	F	50	66	Right-handed alpha
Helix 71	71	F	67	77	Right-handed alpha
Helix 72	72	F	98	101	Right-handed 310
Helix 73	73	F	115	117	Right-handed 310
Helix 74	74	F	134	139	Right-handed 310
Helix 75	75	F	140	157	Right-handed alpha
Helix 76	76	F	167	179	Right-handed alpha
Helix 77	77	F	183	189	Right-handed alpha
Helix 78	78	F	204	209	Right-handed alpha
Helix 79	79	F	209	226	Right-handed alpha
Helix 80	80	F	226	237	Right-handed alpha
Helix 81	81	F	237	250	Right-handed alpha

There are 44 sheets in PDB entry 3KWV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	196	first strand
Strand 2	A	201	205	anti-parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	394	first strand
Strand 2	A	381	385	anti-parallel
Strand 3	A	447	452	anti-parallel
Strand 4	A	328	334	anti-parallel
Strand 5	A	289	297	anti-parallel
Strand 6	A	262	273	anti-parallel
Strand 7	A	358	368	anti-parallel
Strand 8	A	419	420	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	411	first strand
Strand 2	A	358	368	anti-parallel
Strand 3	A	432	434	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	375	first strand
Strand 2	A	404	405	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	458	462	first strand
Strand 2	A	469	476	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	501	506	first strand
Strand 2	A	488	493	anti-parallel
Strand 3	A	588	593	parallel
Strand 4	A	550	554	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	542	first strand
Strand 2	A	545	546	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	596	598	first strand
Strand 2	A	604	607	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	626	629	first strand
Strand 2	A	673	677	anti-parallel
Strand 3	A	666	669	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	653	655	first strand
Strand 2	A	639	647	anti-parallel
Strand 3	A	696	702	anti-parallel
Strand 4	A	724	729	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	196	first strand
Strand 2	B	201	205	anti-parallel

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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	389	394	first strand
Strand 2	B	381	385	anti-parallel
Strand 3	B	447	452	anti-parallel
Strand 4	B	328	334	anti-parallel
Strand 5	B	289	297	anti-parallel
Strand 6	B	262	273	anti-parallel
Strand 7	B	358	368	anti-parallel
Strand 8	B	419	420	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	411	first strand
Strand 2	B	358	368	anti-parallel
Strand 3	B	432	434	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	375	first strand
Strand 2	B	404	405	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	458	462	first strand
Strand 2	B	469	476	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	501	506	first strand
Strand 2	B	488	493	anti-parallel
Strand 3	B	588	593	parallel
Strand 4	B	550	554	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	541	542	first strand
Strand 2	B	545	546	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	596	598	first strand
Strand 2	B	604	607	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	619	622	first strand
Strand 2	B	626	629	anti-parallel
Strand 3	B	674	677	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	653	655	first strand
Strand 2	B	639	647	anti-parallel
Strand 3	B	696	702	anti-parallel
Strand 4	B	724	729	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	84	first strand
Strand 2	C	128	132	parallel
Strand 3	C	119	122	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	105	first strand
Strand 2	C	111	113	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	196	first strand
Strand 2	D	201	205	anti-parallel

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There are 8 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	389	394	first strand
Strand 2	D	381	385	anti-parallel
Strand 3	D	447	452	anti-parallel
Strand 4	D	328	334	anti-parallel
Strand 5	D	289	297	anti-parallel
Strand 6	D	262	273	anti-parallel
Strand 7	D	358	368	anti-parallel
Strand 8	D	419	420	anti-parallel

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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	409	411	first strand
Strand 2	D	358	368	anti-parallel
Strand 3	D	432	434	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	374	375	first strand
Strand 2	D	404	405	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	458	462	first strand
Strand 2	D	469	476	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	501	506	first strand
Strand 2	D	488	493	anti-parallel
Strand 3	D	588	593	parallel
Strand 4	D	550	554	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	541	542	first strand
Strand 2	D	545	546	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	596	598	first strand
Strand 2	D	604	607	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	626	629	first strand
Strand 2	D	673	677	anti-parallel
Strand 3	D	666	669	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	653	655	first strand
Strand 2	D	639	647	anti-parallel
Strand 3	D	696	702	anti-parallel
Strand 4	D	724	729	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	192	196	first strand
Strand 2	E	201	205	anti-parallel

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There are 8 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	389	394	first strand
Strand 2	E	381	385	anti-parallel
Strand 3	E	447	452	anti-parallel
Strand 4	E	328	334	anti-parallel
Strand 5	E	289	297	anti-parallel
Strand 6	E	262	273	anti-parallel
Strand 7	E	358	368	anti-parallel
Strand 8	E	419	420	anti-parallel

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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	409	411	first strand
Strand 2	E	358	368	anti-parallel
Strand 3	E	432	434	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	374	375	first strand
Strand 2	E	404	405	anti-parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	458	462	first strand
Strand 2	E	469	476	anti-parallel

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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	501	506	first strand
Strand 2	E	488	493	anti-parallel
Strand 3	E	588	593	parallel
Strand 4	E	550	554	anti-parallel

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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	541	542	first strand
Strand 2	E	545	546	anti-parallel

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There are 2 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	596	598	first strand
Strand 2	E	604	607	anti-parallel

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There are 3 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	619	622	first strand
Strand 2	E	626	629	anti-parallel
Strand 3	E	674	677	anti-parallel

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There are 4 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	653	655	first strand
Strand 2	E	639	647	anti-parallel
Strand 3	E	696	702	anti-parallel
Strand 4	E	724	729	anti-parallel

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There are 3 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	80	84	first strand
Strand 2	F	128	132	parallel
Strand 3	F	119	122	anti-parallel

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There are 2 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	103	105	first strand
Strand 2	F	111	113	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3KWV

Analysis of interatomic Contacts of Structural Units in PDB entry:
3KWV