Analysis of interatomic Contacts of Structural Units in PDB entry:
3KYF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KYF entry

There is 1 chain in PDB entry 3KYF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 8GLU 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 3KYF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 30Right-handed alpha
Helix 2
2
A
66 68Right-handed 310
Helix 3
3
A
69 75Right-handed alpha
Helix 4
4
A
131 135Right-handed 310
Helix 5
5
A
171 175Right-handed 310
Helix 6
6
A
206 208Right-handed 310
Helix 7
7
A
221 238Right-handed alpha
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There are 3 sheets in PDB entry 3KYF. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 14first strand
Strand 2
A
117 120anti-parallel
Strand 3
A
88 94anti-parallel
Strand 4
A
79 85anti-parallel
Strand 5
A
34 38anti-parallel
Strand 6
A
44 47anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 53first strand
Strand 2
A
58 62anti-parallel
Strand 3
A
106 111anti-parallel
Strand 4
A
99 103anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
151 158anti-parallel
Strand 3
A
162 168anti-parallel
Strand 4
A
210 218anti-parallel
Strand 5
A
192 205anti-parallel
Strand 6
A
180 186anti-parallel
Strand 7
A
137 140anti-parallel
Strand 8
A
151 158anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il