Analysis of interatomic Contacts of Structural Units in PDB entry:
3KYQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KYQ entry

There is 1 chain in PDB entry 3KYQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 0ASN 192
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 3KYQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 50Right-handed alpha
Helix 2
2
A
86 105Right-handed alpha
Helix 3
3
A
106 110Right-handed 310
Helix 4
4
A
122 130Right-handed alpha
Helix 5
5
A
131 136Right-handed 310
Helix 6
6
A
139 148Right-handed alpha
Helix 7
7
A
156 160Right-handed 310
Helix 8
8
A
166 174Right-handed alpha
Helix 9
9
A
178 192Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3KYQ.

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 23first strand
Strand 2
A
3 11anti-parallel
Strand 3
A
75 82anti-parallel
Strand 4
A
64 70anti-parallel
Strand 5
A
55 60anti-parallel
Strand 6
A
152 154parallel
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