Analysis of interatomic Contacts of Structural Units in PDB entry:
3KZB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KZB entry

There is 1 chain in PDB entry 3KZB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0ARG 499
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3KZB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 64Right-handed alpha
Helix 2
2
A
68 70Right-handed 310
Helix 3
3
A
105 117Right-handed alpha
Helix 4
4
A
117 126Right-handed alpha
Helix 5
5
A
133 145Right-handed alpha
Helix 6
6
A
145 151Right-handed alpha
Helix 7
7
A
159 169Right-handed alpha
Helix 8
8
A
175 181Right-handed alpha
Helix 9
9
A
192 199Right-handed alpha
Helix 10
10
A
202 206Right-handed 310
Helix 11
11
A
220 228Right-handed alpha
Helix 12
12
A
241 249Right-handed alpha
Helix 13
13
A
304 312Right-handed alpha
Helix 14
14
A
313 316Right-handed 310
Helix 15
15
A
323 334Right-handed alpha
Helix 16
16
A
373 397Right-handed alpha
Helix 17
17
A
408 412Right-handed 310
Helix 18
18
A
413 425Right-handed alpha
Helix 19
19
A
436 450Right-handed alpha
Helix 20
20
A
455 467Right-handed alpha
Helix 21
21
A
479 497Right-handed alpha
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There are 8 sheets in PDB entry 3KZB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 33first strand
Strand 2
A
14 20anti-parallel
Strand 3
A
4 10anti-parallel
Strand 4
A
72 79parallel
Strand 5
A
239 240parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 46first strand
Strand 2
A
97 98anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 87first strand
Strand 2
A
154 158anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 174first strand
Strand 2
A
208 210parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 185first strand
Strand 2
A
190 191anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 218first strand
Strand 2
A
234 236anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 287first strand
Strand 2
A
294 301anti-parallel
Strand 3
A
265 272anti-parallel
Strand 4
A
257 261anti-parallel
Strand 5
A
403 407parallel
Strand 6
A
427 430parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 348first strand
Strand 2
A
362 366anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il