Analysis of interatomic Contacts of Structural Units in PDB entry:
3L01


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3L01 entry

There are 2 chains in PDB entry 3L01 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG -1ALA 426
B
 ARG -1ALA 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 3L01. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 32Right-handed alpha
Helix 2
2
A
80 85Right-handed 310
Helix 3
3
A
91 116Right-handed alpha
Helix 4
4
A
131 143Right-handed alpha
Helix 5
5
A
160 166Right-handed alpha
Helix 6
6
A
168 172Right-handed 310
Helix 7
7
A
178 187Right-handed alpha
Helix 8
8
A
194 201Right-handed alpha
Helix 9
9
A
201 206Right-handed alpha
Helix 10
10
A
207 209Right-handed 310
Helix 11
11
A
225 229Right-handed 310
Helix 12
12
A
232 243Right-handed alpha
Helix 13
13
A
264 276Right-handed alpha
Helix 14
14
A
279 282Right-handed 310
Helix 15
15
A
293 307Right-handed alpha
Helix 16
16
A
318 327Right-handed alpha
Helix 17
17
A
342 351Right-handed alpha
Helix 18
18
A
361 367Right-handed alpha
Helix 19
19
A
379 394Right-handed alpha
Helix 20
20
A
397 410Right-handed alpha
Helix 21
21
A
413 426Right-handed alpha
Helix 22
22
B
17 32Right-handed alpha
Helix 23
23
B
80 85Right-handed 310
Helix 24
24
B
91 116Right-handed alpha
Helix 25
25
B
131 143Right-handed alpha
Helix 26
26
B
160 166Right-handed alpha
Helix 27
27
B
168 172Right-handed 310
Helix 28
28
B
178 187Right-handed alpha
Helix 29
29
B
194 201Right-handed alpha
Helix 30
30
B
201 206Right-handed alpha
Helix 31
31
B
207 209Right-handed 310
Helix 32
32
B
225 229Right-handed 310
Helix 33
33
B
232 243Right-handed alpha
Helix 34
34
B
264 276Right-handed alpha
Helix 35
35
B
278 282Right-handed 310
Helix 36
36
B
293 307Right-handed alpha
Helix 37
37
B
318 327Right-handed alpha
Helix 38
38
B
342 351Right-handed alpha
Helix 39
39
B
362 367Right-handed alpha
Helix 40
40
B
379 394Right-handed alpha
Helix 41
41
B
397 410Right-handed alpha
Helix 42
42
B
413 426Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3L01. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 56first strand
Strand 2
A
59 70anti-parallel
Strand 3
A
73 79anti-parallel
Strand 4
A
35 41parallel
Strand 5
A
2 6parallel
Strand 6
A
123 127parallel
Strand 7
A
146 150parallel
Strand 8
A
189 192parallel
Strand 9
A
212 214parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 159first strand
Strand 2
A
176 177anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 313first strand
Strand 2
A
284 289parallel
Strand 3
A
250 255parallel
Strand 4
A
331 334parallel
Strand 5
A
354 358parallel
Strand 6
A
373 375parallel
Back to list of sheets
Back to top of page

There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 56first strand
Strand 2
B
59 70anti-parallel
Strand 3
B
73 79anti-parallel
Strand 4
B
35 41parallel
Strand 5
B
2 6parallel
Strand 6
B
123 127parallel
Strand 7
B
146 150parallel
Strand 8
B
189 192parallel
Strand 9
B
212 214parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 159first strand
Strand 2
B
176 177anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
310 313first strand
Strand 2
B
284 289parallel
Strand 3
B
250 255parallel
Strand 4
B
331 334parallel
Strand 5
B
354 358parallel
Strand 6
B
373 375parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il