Analysis of interatomic Contacts of Structural Units in PDB entry:
3L07


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3L07 entry

There are 2 chains in PDB entry 3L07 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0ASN 281
B
 SER -2ARG 282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3L07. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 29Right-handed alpha
Helix 2
2
A
42 59Right-handed alpha
Helix 3
3
A
73 86Right-handed alpha
Helix 4
4
A
104 112Right-handed alpha
Helix 5
5
A
113 117Right-handed 310
Helix 6
6
A
122 132Right-handed alpha
Helix 7
7
A
139 152Right-handed alpha
Helix 8
8
A
170 181Right-handed alpha
Helix 9
9
A
194 200Right-handed alpha
Helix 10
10
A
216 220Right-handed 310
Helix 11
11
A
243 248Right-handed alpha
Helix 12
12
A
263 280Right-handed alpha
Helix 13
13
B
5 29Right-handed alpha
Helix 14
14
B
42 59Right-handed alpha
Helix 15
15
B
73 86Right-handed alpha
Helix 16
16
B
104 112Right-handed alpha
Helix 17
17
B
113 117Right-handed 310
Helix 18
18
B
122 131Right-handed alpha
Helix 19
19
B
139 152Right-handed alpha
Helix 20
20
B
170 181Right-handed alpha
Helix 21
21
B
194 200Right-handed alpha
Helix 22
22
B
216 220Right-handed 310
Helix 23
23
B
243 248Right-handed alpha
Helix 24
24
B
260 281Right-handed alpha
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There are 5 sheets in PDB entry 3L07. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
253 254parallel
Strand 3
A
225 228parallel
Strand 4
A
204 207parallel
Strand 5
A
160 164parallel
Strand 6
A
184 188parallel
Strand 7
B
184 188anti-parallel
Strand 8
B
160 164parallel
Strand 9
B
204 207parallel
Strand 10
B
225 228parallel
Strand 11
B
253 254parallel
Strand 12
B
2 3parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 68first strand
Strand 2
A
33 39parallel
Strand 3
A
92 95parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 234first strand
Strand 2
A
237 239anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 68first strand
Strand 2
B
33 39parallel
Strand 3
B
92 95parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 234first strand
Strand 2
B
237 239anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il