Analysis of interatomic Contacts of Structural Units in PDB entry:
3L0O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3L0O entry

There are 2 chains in PDB entry 3L0O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4ILE 420
B
 GLY 58ILE 420
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 3L0O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 16Right-handed alpha
Helix 2
2
A
17 28Right-handed alpha
Helix 3
3
A
32 36Right-handed 310
Helix 4
4
A
37 48Right-handed alpha
Helix 5
5
A
49 51Right-handed 310
Helix 6
6
A
74 78Right-handed 310
Helix 7
7
A
89 96Right-handed alpha
Helix 8
8
A
139 143Right-handed 310
Helix 9
9
A
160 170Right-handed alpha
Helix 10
10
A
187 203Right-handed alpha
Helix 11
11
A
216 221Right-handed alpha
Helix 12
12
A
239 260Right-handed alpha
Helix 13
13
A
270 282Right-handed alpha
Helix 14
14
A
298 307Right-handed alpha
Helix 15
15
A
330 339Right-handed alpha
Helix 16
16
A
350 355Right-handed alpha
Helix 17
17
A
371 375Right-handed 310
Helix 18
18
A
377 392Right-handed alpha
Helix 19
19
A
395 409Right-handed alpha
Helix 20
20
A
412 420Right-handed alpha
Helix 21
21
B
74 78Right-handed 310
Helix 22
22
B
160 170Right-handed alpha
Helix 23
23
B
187 203Right-handed alpha
Helix 24
24
B
216 225Right-handed alpha
Helix 25
25
B
239 260Right-handed alpha
Helix 26
26
B
270 282Right-handed alpha
Helix 27
27
B
300 306Right-handed alpha
Helix 28
28
B
335 340Right-handed alpha
Helix 29
29
B
350 355Right-handed alpha
Helix 30
30
B
363 367Right-handed 310
Helix 31
31
B
371 375Right-handed 310
Helix 32
32
B
377 390Right-handed alpha
Helix 33
33
B
397 409Right-handed alpha
Helix 34
34
B
412 419Right-handed alpha
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There are 6 sheets in PDB entry 3L0O. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 130first strand
Strand 2
A
118 126anti-parallel
Strand 3
A
103 109anti-parallel
Strand 4
A
55 64anti-parallel
Strand 5
A
70 73anti-parallel
Strand 6
A
86 88anti-parallel
Strand 7
A
118 126parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
309 311anti-parallel
Strand 3
A
316 324anti-parallel
Strand 4
A
263 269parallel
Strand 5
A
207 212parallel
Strand 6
A
230 233parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
309 311anti-parallel
Strand 3
A
316 324anti-parallel
Strand 4
A
177 182parallel
Strand 5
A
345 348parallel
Strand 6
A
368 369anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 88first strand
Strand 2
B
70 73anti-parallel
Strand 3
B
59 64anti-parallel
Strand 4
B
103 105anti-parallel
Strand 5
B
125 126anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 146first strand
Strand 2
B
310 311anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 235first strand
Strand 2
B
207 215parallel
Strand 3
B
263 269parallel
Strand 4
B
316 324parallel
Strand 5
B
177 182parallel
Strand 6
B
345 348parallel
Strand 7
B
368 369anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il