Analysis of interatomic Contacts of Structural Units in PDB entry:
3L0X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3L0X entry

There are 2 chains in PDB entry 3L0X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 163
B
 GLU 165ASN 255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 3L0X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 18Right-handed alpha
Helix 2
2
A
55 57Right-handed 310
Helix 3
3
A
72 80Right-handed alpha
Helix 4
4
A
141 152Right-handed alpha
Helix 5
5
B
190 194Right-handed 310
Helix 6
6
B
209 216Right-handed alpha
Helix 7
7
B
217 222Right-handed 310
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There are 4 sheets in PDB entry 3L0X. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 62first strand
Strand 2
A
2 5anti-parallel
Strand 3
A
89 91anti-parallel
Strand 4
A
98 104anti-parallel
Strand 5
A
111 117anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
25 31anti-parallel
Strand 3
A
70 71anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
25 31anti-parallel
Strand 3
A
34 40anti-parallel
Strand 4
A
46 53anti-parallel
Strand 5
B
244 250anti-parallel
Strand 6
B
235 241anti-parallel
Strand 7
B
224 229anti-parallel
Strand 8
A
135 140anti-parallel
Strand 9
B
196 199anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 182first strand
Strand 2
B
167 172anti-parallel
Strand 3
A
157 162anti-parallel
Strand 4
B
203 208anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il