Analysis of interatomic Contacts of Structural Units in PDB entry:
3L10


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3L10 entry

There are 2 chains in PDB entry 3L10 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 163
B
 MET 1ASN 169
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 3L10. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 20Right-handed alpha
Helix 2
2
A
55 57Right-handed 310
Helix 3
3
A
72 81Right-handed alpha
Helix 4
4
A
141 152Right-handed alpha
Helix 5
5
B
22 35Right-handed alpha
Helix 6
6
B
37 39Right-handed 310
Helix 7
7
B
104 108Right-handed 310
Helix 8
8
B
123 130Right-handed alpha
Helix 9
9
B
131 136Right-handed 310
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There are 4 sheets in PDB entry 3L10. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
2 5anti-parallel
Strand 3
A
89 92anti-parallel
Strand 4
A
98 104anti-parallel
Strand 5
A
111 117anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 71first strand
Strand 2
A
25 31anti-parallel
Strand 3
A
34 40anti-parallel
Strand 4
A
46 53anti-parallel
Strand 5
B
158 164anti-parallel
Strand 6
B
149 155anti-parallel
Strand 7
B
138 143anti-parallel
Strand 8
A
135 140anti-parallel
Strand 9
B
110 113anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 96first strand
Strand 2
B
80 86anti-parallel
Strand 3
A
157 163anti-parallel
Strand 4
B
117 122anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
2 6anti-parallel
Strand 3
B
66 71parallel
Strand 4
B
41 45anti-parallel
Strand 5
B
48 49anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il