Analysis of interatomic Contacts of Structural Units in PDB entry:
3L40


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3L40 entry

There are 2 chains in PDB entry 3L40 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 659ARG 876
B
 LYS 665ARG 876
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 3L40. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
679 686Right-handed alpha
Helix 2
2
A
708 715Right-handed alpha
Helix 3
3
A
716 718Right-handed 310
Helix 4
4
A
723 734Right-handed alpha
Helix 5
5
A
739 743Right-handed 310
Helix 6
6
A
746 754Right-handed alpha
Helix 7
7
A
756 768Right-handed alpha
Helix 8
8
A
785 787Right-handed 310
Helix 9
9
A
788 799Right-handed alpha
Helix 10
10
A
810 820Right-handed alpha
Helix 11
11
A
827 829Right-handed 310
Helix 12
12
A
830 835Right-handed alpha
Helix 13
13
A
837 844Right-handed alpha
Helix 14
14
A
851 862Right-handed alpha
Helix 15
15
A
871 876Right-handed alpha
Helix 16
16
B
679 686Right-handed alpha
Helix 17
17
B
708 715Right-handed alpha
Helix 18
18
B
716 718Right-handed 310
Helix 19
19
B
723 734Right-handed alpha
Helix 20
20
B
739 743Right-handed 310
Helix 21
21
B
746 754Right-handed alpha
Helix 22
22
B
756 768Right-handed alpha
Helix 23
23
B
785 787Right-handed 310
Helix 24
24
B
788 799Right-handed alpha
Helix 25
25
B
810 820Right-handed alpha
Helix 26
26
B
827 829Right-handed 310
Helix 27
27
B
830 835Right-handed alpha
Helix 28
28
B
837 842Right-handed alpha
Helix 29
29
B
851 862Right-handed alpha
Helix 30
30
B
871 876Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3L40. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
688 690first strand
Strand 2
A
667 671parallel
Strand 3
A
699 701parallel
Strand 4
A
720 722parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
802 806first strand
Strand 2
A
776 780parallel
Strand 3
A
822 825parallel
Strand 4
A
847 850parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
688 690first strand
Strand 2
B
667 671parallel
Strand 3
B
699 701parallel
Strand 4
B
720 722parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
802 806first strand
Strand 2
B
776 780parallel
Strand 3
B
822 825parallel
Strand 4
B
847 850parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il