Analysis of interatomic Contacts of Structural Units in PDB entry:
3L48


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3L48 entry

There are 5 chains in PDB entry 3L48 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 728GLN 808
B
 GLY 728PRO 807
C
 LYS 722PRO 807
D
 GLY 728PRO 807
E
 LYS 729PRO 807
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 3L48. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
761 763Right-handed 310
Helix 2
2
B
761 763Right-handed 310
Helix 3
3
C
761 763Right-handed 310
Helix 4
4
D
761 763Right-handed 310
Helix 5
5
E
761 763Right-handed 310
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There are 10 sheets in PDB entry 3L48. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
765 768first strand
Strand 2
A
731 737anti-parallel
Strand 3
A
799 805parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
756 759first strand
Strand 2
A
748 750anti-parallel
Strand 3
A
776 780anti-parallel
Strand 4
A
785 790anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
765 771first strand
Strand 2
B
729 737anti-parallel
Strand 3
B
799 805parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
756 759first strand
Strand 2
B
748 750anti-parallel
Strand 3
B
776 781anti-parallel
Strand 4
B
784 790anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
765 771first strand
Strand 2
C
729 736anti-parallel
Strand 3
C
801 804parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
756 759first strand
Strand 2
C
748 750anti-parallel
Strand 3
C
776 781anti-parallel
Strand 4
C
784 790anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
765 771first strand
Strand 2
D
729 737anti-parallel
Strand 3
D
799 805parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
756 759first strand
Strand 2
D
748 750anti-parallel
Strand 3
D
776 781anti-parallel
Strand 4
D
784 790anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
765 768first strand
Strand 2
E
731 737anti-parallel
Strand 3
E
799 805parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
756 759first strand
Strand 2
E
748 750anti-parallel
Strand 3
E
776 781anti-parallel
Strand 4
E
784 790anti-parallel
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