Analysis of interatomic Contacts of Structural Units in PDB entry:
3L4Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3L4Q entry

There are 4 chains in PDB entry 3L4Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 83ALA 202
C
 LYS 429ILE 591
B
 VAL 84ALA 202
D
 LYS 429ILE 591
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3L4Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
94 100Right-handed alpha
Helix 2
2
A
170 187Right-handed alpha
Helix 3
3
A
195 202Right-handed alpha
Helix 4
4
C
429 493Right-handed alpha
Helix 5
5
C
497 501Right-handed 310
Helix 6
6
C
516 578Right-handed alpha
Helix 7
7
C
581 590Right-handed alpha
Helix 8
8
B
94 100Right-handed alpha
Helix 9
9
B
170 188Right-handed alpha
Helix 10
10
B
195 202Right-handed alpha
Helix 11
11
D
430 496Right-handed alpha
Helix 12
12
D
517 578Right-handed alpha
Helix 13
13
D
581 590Right-handed alpha
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There are 4 sheets in PDB entry 3L4Q. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
127 137anti-parallel
Strand 3
A
140 151anti-parallel
Strand 4
A
156 162anti-parallel
Strand 5
A
115 120anti-parallel
Strand 6
A
107 112anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
127 137anti-parallel
Strand 3
A
191 194parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 91first strand
Strand 2
B
127 137anti-parallel
Strand 3
B
140 151anti-parallel
Strand 4
B
156 162anti-parallel
Strand 5
B
115 120anti-parallel
Strand 6
B
107 112anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 91first strand
Strand 2
B
127 137anti-parallel
Strand 3
B
191 194parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il