Analysis of interatomic Contacts of Structural Units in PDB entry:
3L5J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3L5J entry

There are 2 chains in PDB entry 3L5J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 301	THR 588
B	GLU 301	THR 588

There are 4 helices in PDB entry 3L5J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	333	338	Right-handed alpha
Helix 2	2	A	521	526	Right-handed alpha
Helix 3	3	B	333	338	Right-handed alpha
Helix 4	4	B	521	526	Right-handed alpha

There are 15 sheets in PDB entry 3L5J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	315	first strand
Strand 2	A	323	329	anti-parallel
Strand 3	A	364	369	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	360	first strand
Strand 2	A	343	350	anti-parallel
Strand 3	A	374	381	anti-parallel
Strand 4	A	390	394	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	413	first strand
Strand 2	A	416	422	anti-parallel
Strand 3	A	457	459	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	452	first strand
Strand 2	A	430	437	anti-parallel
Strand 3	A	469	478	anti-parallel
Strand 4	A	481	482	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	452	first strand
Strand 2	A	430	437	anti-parallel
Strand 3	A	469	478	anti-parallel
Strand 4	A	486	491	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	504	507	first strand
Strand 2	A	513	516	anti-parallel
Strand 3	A	554	557	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	544	549	first strand
Strand 2	A	531	538	anti-parallel
Strand 3	A	565	574	anti-parallel
Strand 4	A	577	580	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	544	549	first strand
Strand 2	A	531	538	anti-parallel
Strand 3	A	565	574	anti-parallel
Strand 4	A	584	587	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	310	313	first strand
Strand 2	B	322	329	anti-parallel
Strand 3	B	364	370	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	360	first strand
Strand 2	B	343	350	anti-parallel
Strand 3	B	374	381	anti-parallel
Strand 4	B	390	394	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	406	413	first strand
Strand 2	B	416	422	anti-parallel
Strand 3	B	457	459	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	447	452	first strand
Strand 2	B	430	437	anti-parallel
Strand 3	B	469	477	anti-parallel
Strand 4	B	486	491	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	504	508	first strand
Strand 2	B	513	516	anti-parallel
Strand 3	B	554	557	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	548	first strand
Strand 2	B	531	537	anti-parallel
Strand 3	B	565	573	anti-parallel
Strand 4	B	578	580	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	548	first strand
Strand 2	B	531	537	anti-parallel
Strand 3	B	565	573	anti-parallel
Strand 4	B	584	587	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3L5J

Analysis of interatomic Contacts of Structural Units in PDB entry:
3L5J