Analysis of interatomic Contacts of Structural Units in PDB entry:
3L5K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3L5K entry

There is 1 chain in PDB entry 3L5K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU -4GLU 228
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 3L5K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 37Right-handed alpha
Helix 2
2
A
42 50Right-handed alpha
Helix 3
3
A
53 66Right-handed alpha
Helix 4
4
A
70 86Right-handed alpha
Helix 5
5
A
87 89Right-handed 310
Helix 6
6
A
94 105Right-handed alpha
Helix 7
7
A
116 124Right-handed alpha
Helix 8
8
A
127 132Right-handed alpha
Helix 9
9
A
152 161Right-handed alpha
Helix 10
10
A
167 169Right-handed 310
Helix 11
11
A
177 187Right-handed alpha
Helix 12
12
A
200 204Right-handed 310
Helix 13
13
A
213 217Right-handed 310
Helix 14
14
A
218 223Right-handed 310
Back to top of page

There is 1 sheet ( A) in PDB entry 3L5K.

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
0 1first strand
Strand 2
A
209 210anti-parallel
Strand 3
A
190 193parallel
Strand 4
A
171 175parallel
Strand 5
A
10 14parallel
Strand 6
A
109 112parallel
Strand 7
A
137 138parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il