Analysis of interatomic Contacts of Structural Units in PDB entry:
3L60


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3L60 entry

There is 1 chain in PDB entry 3L60 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 165LEU 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3L60. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
171 188Right-handed alpha
Helix 2
2
A
199 210Right-handed alpha
Helix 3
3
A
217 233Right-handed alpha
Helix 4
4
A
234 236Right-handed 310
Helix 5
5
A
274 278Right-handed 310
Helix 6
6
A
279 297Right-handed alpha
Helix 7
7
A
300 305Right-handed 310
Helix 8
8
A
313 318Right-handed 310
Helix 9
9
A
368 385Right-handed alpha
Helix 10
10
A
385 390Right-handed alpha
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There are 4 sheets in PDB entry 3L60. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 198first strand
Strand 2
A
349 363anti-parallel
Strand 3
A
332 336anti-parallel
Strand 4
A
309 312parallel
Strand 5
A
257 259parallel
Strand 6
A
271 272anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 198first strand
Strand 2
A
349 363anti-parallel
Strand 3
A
340 346anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
248 251anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 263first strand
Strand 2
A
266 268anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il