Analysis of interatomic Contacts of Structural Units in PDB entry:
3L6D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3L6D entry

There are 2 chains in PDB entry 3L6D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ALA 294
B
 SER 2GLU 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3L6D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 31Right-handed alpha
Helix 2
2
A
41 52Right-handed alpha
Helix 3
3
A
58 66Right-handed alpha
Helix 4
4
A
75 84Right-handed alpha
Helix 5
5
A
87 92Right-handed alpha
Helix 6
6
A
106 118Right-handed alpha
Helix 7
7
A
130 134Right-handed 310
Helix 8
8
A
146 159Right-handed alpha
Helix 9
9
A
168 200Right-handed alpha
Helix 10
10
A
203 233Right-handed alpha
Helix 11
11
A
241 259Right-handed alpha
Helix 12
12
A
263 279Right-handed alpha
Helix 13
13
A
285 294Right-handed 310
Helix 14
14
B
4 8Right-handed 310
Helix 15
15
B
18 31Right-handed alpha
Helix 16
16
B
41 51Right-handed alpha
Helix 17
17
B
58 66Right-handed alpha
Helix 18
18
B
75 85Right-handed alpha
Helix 19
19
B
87 93Right-handed alpha
Helix 20
20
B
104 118Right-handed alpha
Helix 21
21
B
130 134Right-handed 310
Helix 22
22
B
146 153Right-handed alpha
Helix 23
23
B
153 158Right-handed alpha
Helix 24
24
B
168 200Right-handed alpha
Helix 25
25
B
203 233Right-handed alpha
Helix 26
26
B
241 260Right-handed alpha
Helix 27
27
B
263 279Right-handed alpha
Helix 28
28
B
285 294Right-handed 310
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There are 2 sheets in PDB entry 3L6D. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
35 38parallel
Strand 3
A
12 15parallel
Strand 4
A
68 71parallel
Strand 5
A
96 99parallel
Strand 6
A
121 128parallel
Strand 7
A
140 145anti-parallel
Strand 8
A
163 166parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 55first strand
Strand 2
B
35 38parallel
Strand 3
B
12 15parallel
Strand 4
B
68 71parallel
Strand 5
B
96 99parallel
Strand 6
B
121 128parallel
Strand 7
B
140 145anti-parallel
Strand 8
B
163 166parallel
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