Analysis of interatomic Contacts of Structural Units in PDB entry:
3L6E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3L6E entry

There are 2 chains in PDB entry 3L6E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3GLY 229
B
 LEU 3GLU 228
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3L6E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 26Right-handed alpha
Helix 2
2
A
36 48Right-handed alpha
Helix 3
3
A
60 76Right-handed alpha
Helix 4
4
A
97 124Right-handed alpha
Helix 5
5
A
144 166Right-handed alpha
Helix 6
6
A
199 211Right-handed alpha
Helix 7
7
B
13 26Right-handed alpha
Helix 8
8
B
36 48Right-handed alpha
Helix 9
9
B
60 76Right-handed alpha
Helix 10
10
B
101 124Right-handed alpha
Helix 11
11
B
144 166Right-handed alpha
Helix 12
12
B
199 211Right-handed alpha
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There are 2 sheets in PDB entry 3L6E. Click on sheet of interest to get list of strands forming it: A, B,

There are 14 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 55first strand
Strand 2
A
29 34parallel
Strand 3
A
5 9parallel
Strand 4
A
80 84parallel
Strand 5
A
128 133parallel
Strand 6
A
171 181parallel
Strand 7
A
217 226parallel
Strand 8
B
217 226anti-parallel
Strand 9
B
171 181parallel
Strand 10
B
128 133parallel
Strand 11
B
80 84parallel
Strand 12
B
6 8parallel
Strand 13
B
30 34parallel
Strand 14
B
51 55parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 137first strand
Strand 2
A
171 181parallel
Strand 3
A
217 226parallel
Strand 4
B
217 226anti-parallel
Strand 5
B
171 181parallel
Strand 6
B
136 137parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il