Analysis of interatomic Contacts of Structural Units in PDB entry:
3L6U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3L6U entry

There are 2 chains in PDB entry 3L6U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 9ASP 282
B
 ASN 9ASP 282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3L6U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 37Right-handed alpha
Helix 2
2
A
49 63Right-handed alpha
Helix 3
3
A
78 88Right-handed alpha
Helix 4
4
A
111 132Right-handed alpha
Helix 5
5
A
147 162Right-handed alpha
Helix 6
6
A
178 192Right-handed alpha
Helix 7
7
A
203 217Right-handed alpha
Helix 8
8
A
230 239Right-handed alpha
Helix 9
9
A
249 266Right-handed alpha
Helix 10
10
B
20 37Right-handed alpha
Helix 11
11
B
49 63Right-handed alpha
Helix 12
12
B
78 88Right-handed alpha
Helix 13
13
B
111 132Right-handed alpha
Helix 14
14
B
147 162Right-handed alpha
Helix 15
15
B
178 192Right-handed alpha
Helix 16
16
B
203 217Right-handed alpha
Helix 17
17
B
230 239Right-handed alpha
Helix 18
18
B
249 266Right-handed alpha
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There are 4 sheets in PDB entry 3L6U. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 45first strand
Strand 2
A
10 15parallel
Strand 3
A
67 71parallel
Strand 4
A
92 95parallel
Strand 5
A
106 110parallel
Strand 6
A
273 276parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 174first strand
Strand 2
A
136 142parallel
Strand 3
A
198 201parallel
Strand 4
A
223 228parallel
Strand 5
A
244 247parallel
Strand 6
A
279 281anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 45first strand
Strand 2
B
10 15parallel
Strand 3
B
67 71parallel
Strand 4
B
92 95parallel
Strand 5
B
104 110parallel
Strand 6
B
273 276parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 174first strand
Strand 2
B
136 142parallel
Strand 3
B
198 201parallel
Strand 4
B
223 228parallel
Strand 5
B
244 247parallel
Strand 6
B
279 281anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il