Analysis of interatomic Contacts of Structural Units in PDB entry:
3L84


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3L84 entry

There is 1 chain in PDB entry 3L84 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1LYS 632
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3L84. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 25Right-handed alpha
Helix 2
2
A
29 43Right-handed alpha
Helix 3
3
A
65 67Right-handed 310
Helix 4
4
A
68 80Right-handed alpha
Helix 5
5
A
84 89Right-handed alpha
Helix 6
6
A
117 138Right-handed alpha
Helix 7
7
A
152 157Right-handed alpha
Helix 8
8
A
157 170Right-handed alpha
Helix 9
9
A
191 193Right-handed 310
Helix 10
10
A
197 205Right-handed alpha
Helix 11
11
A
216 229Right-handed alpha
Helix 12
12
A
246 250Right-handed 310
Helix 13
13
A
252 256Right-handed 310
Helix 14
14
A
261 273Right-handed alpha
Helix 15
15
A
283 292Right-handed alpha
Helix 16
16
A
292 311Right-handed alpha
Helix 17
17
A
313 322Right-handed alpha
Helix 18
18
A
339 355Right-handed alpha
Helix 19
19
A
365 370Right-handed alpha
Helix 20
20
A
390 405Right-handed alpha
Helix 21
21
A
417 432Right-handed alpha
Helix 22
22
A
443 447Right-handed 310
Helix 23
23
A
450 454Right-handed 310
Helix 24
24
A
457 465Right-handed alpha
Helix 25
25
A
475 489Right-handed alpha
Helix 26
26
A
512 516Right-handed 310
Helix 27
27
A
536 550Right-handed alpha
Helix 28
28
A
561 567Right-handed alpha
Helix 29
29
A
569 577Right-handed alpha
Helix 30
30
A
589 595Right-handed 310
Helix 31
31
A
610 618Right-handed alpha
Helix 32
32
A
621 630Right-handed alpha
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There are 4 sheets in PDB entry 3L84. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
146 151parallel
Strand 3
A
175 181parallel
Strand 4
A
234 239parallel
Strand 5
A
208 213parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 185first strand
Strand 2
A
188 189anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 386first strand
Strand 2
A
358 362parallel
Strand 3
A
408 414parallel
Strand 4
A
436 440parallel
Strand 5
A
493 496parallel
Strand 6
A
469 471parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
518 521first strand
Strand 2
A
554 558anti-parallel
Strand 3
A
528 532parallel
Strand 4
A
580 584parallel
Strand 5
A
598 600parallel
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