Analysis of interatomic Contacts of Structural Units in PDB entry:
3L8H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3L8H entry

There are 4 chains in PDB entry 3L8H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ALA 179
B
 MSE 1ALA 179
C
 MSE 1ALA 179
D
 MSE 1ALA 179
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3L8H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 26Right-handed 310
Helix 2
2
A
31 42Right-handed alpha
Helix 3
3
A
61 79Right-handed alpha
Helix 4
4
A
104 115Right-handed alpha
Helix 5
5
A
127 138Right-handed alpha
Helix 6
6
A
148 156Right-handed alpha
Helix 7
7
A
167 178Right-handed alpha
Helix 8
8
B
22 26Right-handed 310
Helix 9
9
B
31 42Right-handed alpha
Helix 10
10
B
61 78Right-handed alpha
Helix 11
11
B
104 115Right-handed alpha
Helix 12
12
B
127 138Right-handed alpha
Helix 13
13
B
148 156Right-handed alpha
Helix 14
14
B
167 178Right-handed alpha
Helix 15
15
C
22 26Right-handed 310
Helix 16
16
C
31 42Right-handed alpha
Helix 17
17
C
61 78Right-handed alpha
Helix 18
18
C
104 115Right-handed alpha
Helix 19
19
C
127 138Right-handed alpha
Helix 20
20
C
148 156Right-handed alpha
Helix 21
21
C
167 178Right-handed alpha
Helix 22
22
D
22 26Right-handed 310
Helix 23
23
D
31 42Right-handed alpha
Helix 24
24
D
61 78Right-handed alpha
Helix 25
25
D
104 115Right-handed alpha
Helix 26
26
D
127 138Right-handed alpha
Helix 27
27
D
148 156Right-handed alpha
Helix 28
28
D
167 178Right-handed alpha
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There are 2 sheets in PDB entry 3L8H. Click on sheet of interest to get list of strands forming it: A, B,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 89first strand
Strand 2
A
45 51parallel
Strand 3
A
3 6parallel
Strand 4
A
122 125parallel
Strand 5
A
140 144parallel
Strand 6
A
162 165parallel
Strand 7
C
162 165anti-parallel
Strand 8
C
140 144parallel
Strand 9
C
122 125parallel
Strand 10
C
2 6parallel
Strand 11
C
44 51parallel
Strand 12
C
85 89parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 89first strand
Strand 2
B
44 51parallel
Strand 3
B
2 6parallel
Strand 4
B
122 125parallel
Strand 5
B
140 144parallel
Strand 6
B
162 165parallel
Strand 7
D
162 165anti-parallel
Strand 8
D
140 144parallel
Strand 9
D
122 125parallel
Strand 10
D
2 6parallel
Strand 11
D
44 51parallel
Strand 12
D
85 89parallel
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