Analysis of interatomic Contacts of Structural Units in PDB entry:
3L9W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3L9W entry

There are 2 chains in PDB entry 3L9W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 399HIS 1174
B
 GLY 399HIS 1174
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 3L9W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
408 421Right-handed alpha
Helix 2
2
A
431 441Right-handed alpha
Helix 3
3
A
452 459Right-handed alpha
Helix 4
4
A
473 488Right-handed alpha
Helix 5
5
A
499 509Right-handed alpha
Helix 6
6
A
518 533Right-handed alpha
Helix 7
7
A
536 561Right-handed alpha
Helix 8
8
A
1010 1014Right-handed 310
Helix 9
9
A
1015 1026Right-handed alpha
Helix 10
10
A
1035 1039Right-handed alpha
Helix 11
11
A
1045 1055Right-handed alpha
Helix 12
12
A
1071 1082Right-handed alpha
Helix 13
13
A
1109 1114Right-handed 310
Helix 14
14
A
1120 1124Right-handed 310
Helix 15
15
A
1125 1135Right-handed alpha
Helix 16
16
A
1152 1173Right-handed alpha
Helix 17
17
B
408 421Right-handed alpha
Helix 18
18
B
431 433Right-handed 310
Helix 19
19
B
434 442Right-handed alpha
Helix 20
20
B
452 459Right-handed alpha
Helix 21
21
B
473 488Right-handed alpha
Helix 22
22
B
499 509Right-handed alpha
Helix 23
23
B
518 534Right-handed alpha
Helix 24
24
B
536 559Right-handed alpha
Helix 25
25
B
564 580Right-handed alpha
Helix 26
26
B
1010 1014Right-handed 310
Helix 27
27
B
1015 1026Right-handed alpha
Helix 28
28
B
1035 1039Right-handed alpha
Helix 29
29
B
1045 1056Right-handed alpha
Helix 30
30
B
1071 1082Right-handed alpha
Helix 31
31
B
1109 1114Right-handed 310
Helix 32
32
B
1120 1124Right-handed 310
Helix 33
33
B
1125 1136Right-handed alpha
Helix 34
34
B
1147 1151Right-handed 310
Helix 35
35
B
1153 1173Right-handed alpha
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There are 6 sheets in PDB entry 3L9W. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 447first strand
Strand 2
A
425 429parallel
Strand 3
A
402 405parallel
Strand 4
A
466 469parallel
Strand 5
A
492 497parallel
Strand 6
A
515 516parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1030 1034first strand
Strand 2
A
1002 1006parallel
Strand 3
A
1058 1064parallel
Strand 4
A
1099 1105parallel
Strand 5
A
1138 1139parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1030 1034first strand
Strand 2
A
1002 1006parallel
Strand 3
A
1058 1064parallel
Strand 4
A
1099 1105parallel
Strand 5
A
1143 1145parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
444 447first strand
Strand 2
B
425 429parallel
Strand 3
B
402 405parallel
Strand 4
B
466 469parallel
Strand 5
B
492 497parallel
Strand 6
B
515 516parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1030 1034first strand
Strand 2
B
1002 1006parallel
Strand 3
B
1058 1064parallel
Strand 4
B
1099 1105parallel
Strand 5
B
1138 1139parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1030 1034first strand
Strand 2
B
1002 1006parallel
Strand 3
B
1058 1064parallel
Strand 4
B
1099 1105parallel
Strand 5
B
1143 1145parallel
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