Analysis of interatomic Contacts of Structural Units in PDB entry:
3LBY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LBY entry

There are 2 chains in PDB entry 3LBY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 181
B
 MET 1LEU 181
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3LBY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 15Right-handed alpha
Helix 2
2
A
31 41Right-handed alpha
Helix 3
3
A
50 64Right-handed alpha
Helix 4
4
A
75 82Right-handed 310
Helix 5
5
A
107 121Right-handed alpha
Helix 6
6
A
138 152Right-handed alpha
Helix 7
7
B
4 15Right-handed alpha
Helix 8
8
B
31 39Right-handed alpha
Helix 9
9
B
75 82Right-handed 310
Helix 10
10
B
111 121Right-handed alpha
Helix 11
11
B
145 152Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3LBY.

There are 14 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 73first strand
Strand 2
A
43 48parallel
Strand 3
A
22 25parallel
Strand 4
A
87 93parallel
Strand 5
A
122 132parallel
Strand 6
A
174 180anti-parallel
Strand 7
A
158 165anti-parallel
Strand 8
B
158 165anti-parallel
Strand 9
B
174 180anti-parallel
Strand 10
B
122 132anti-parallel
Strand 11
B
87 94parallel
Strand 12
B
22 25parallel
Strand 13
B
43 47parallel
Strand 14
B
69 72parallel
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