Analysis of interatomic Contacts of Structural Units in PDB entry:
3LC6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LC6 entry

There are 2 chains in PDB entry 3LC6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3VAL 571
B
 PRO 2GLY 574
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 3LC6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 28Right-handed alpha
Helix 2
2
A
29 31Right-handed 310
Helix 3
3
A
32 37Right-handed alpha
Helix 4
4
A
39 67Right-handed alpha
Helix 5
5
A
75 80Right-handed alpha
Helix 6
6
A
80 88Right-handed alpha
Helix 7
7
A
95 111Right-handed alpha
Helix 8
8
A
151 159Right-handed alpha
Helix 9
9
A
168 181Right-handed alpha
Helix 10
10
A
242 250Right-handed alpha
Helix 11
11
A
263 271Right-handed alpha
Helix 12
12
A
272 274Right-handed 310
Helix 13
13
A
282 287Right-handed alpha
Helix 14
14
A
290 305Right-handed alpha
Helix 15
15
A
306 308Right-handed 310
Helix 16
16
A
351 359Right-handed alpha
Helix 17
17
A
386 397Right-handed alpha
Helix 18
18
A
421 429Right-handed alpha
Helix 19
19
A
431 451Right-handed alpha
Helix 20
20
A
459 461Right-handed 310
Helix 21
21
A
481 485Right-handed 310
Helix 22
22
A
518 523Right-handed alpha
Helix 23
23
A
529 536Right-handed alpha
Helix 24
24
A
542 553Right-handed alpha
Helix 25
25
B
5 22Right-handed alpha
Helix 26
26
B
23 29Right-handed alpha
Helix 27
27
B
30 37Right-handed alpha
Helix 28
28
B
39 69Right-handed alpha
Helix 29
29
B
76 89Right-handed alpha
Helix 30
30
B
93 95Right-handed 310
Helix 31
31
B
96 110Right-handed alpha
Helix 32
32
B
151 156Right-handed alpha
Helix 33
33
B
157 160Right-handed 310
Helix 34
34
B
169 185Right-handed alpha
Helix 35
35
B
242 250Right-handed alpha
Helix 36
36
B
263 271Right-handed alpha
Helix 37
37
B
272 275Right-handed 310
Helix 38
38
B
279 286Right-handed alpha
Helix 39
39
B
292 305Right-handed alpha
Helix 40
40
B
351 357Right-handed alpha
Helix 41
41
B
383 385Right-handed 310
Helix 42
42
B
386 395Right-handed alpha
Helix 43
43
B
422 426Right-handed alpha
Helix 44
44
B
431 451Right-handed alpha
Helix 45
45
B
459 461Right-handed 310
Helix 46
46
B
475 477Right-handed 310
Helix 47
47
B
481 485Right-handed 310
Helix 48
48
B
517 523Right-handed alpha
Helix 49
49
B
530 535Right-handed alpha
Helix 50
50
B
537 540Right-handed 310
Helix 51
51
B
541 550Right-handed alpha
Helix 52
52
B
564 568Right-handed 310
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There are 11 sheets in PDB entry 3LC6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 196first strand
Strand 2
A
211 214anti-parallel
Strand 3
A
219 221anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 203first strand
Strand 2
A
206 208anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 314first strand
Strand 2
A
323 327anti-parallel
Strand 3
A
333 338anti-parallel
Strand 4
A
407 417anti-parallel
Strand 5
A
374 381anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 314first strand
Strand 2
A
323 327anti-parallel
Strand 3
A
333 338anti-parallel
Strand 4
A
407 417anti-parallel
Strand 5
A
401 404anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
463 464first strand
Strand 2
A
472 473anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 143first strand
Strand 2
B
194 197anti-parallel
Strand 3
B
210 213anti-parallel
Strand 4
B
220 223anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
226 227first strand
Strand 2
B
235 236anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 326first strand
Strand 2
B
333 336anti-parallel
Strand 3
B
407 417anti-parallel
Strand 4
B
375 381anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 326first strand
Strand 2
B
333 336anti-parallel
Strand 3
B
407 417anti-parallel
Strand 4
B
402 403anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
420 421first strand
Strand 2
B
463 465anti-parallel
Strand 3
B
471 473anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
454 455first strand
Strand 2
B
479 480anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il