Analysis of interatomic Contacts of Structural Units in PDB entry:
3LC9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LC9 entry

There is 1 chain in PDB entry 3LC9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 6MET 188
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 3LC9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 30Right-handed alpha
Helix 2
2
A
97 104Right-handed alpha
Helix 3
3
A
105 107Right-handed 310
Helix 4
4
A
122 131Right-handed alpha
Helix 5
5
A
140 155Right-handed alpha
Helix 6
6
A
160 175Right-handed alpha
Helix 7
7
A
175 187Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3LC9.

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 12first strand
Strand 2
A
57 63parallel
Strand 3
A
69 75anti-parallel
Strand 4
A
81 86anti-parallel
Strand 5
A
89 92anti-parallel
Strand 6
A
113 116parallel
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