Analysis of interatomic Contacts of Structural Units in PDB entry:
3LDP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LDP entry

There are 2 chains in PDB entry 3LDP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 26SER 406
B
 ASP 26SER 406
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 3LDP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
77 82Right-handed alpha
Helix 2
2
A
95 98Right-handed 310
Helix 3
3
A
105 112Right-handed alpha
Helix 4
4
A
113 115Right-handed 310
Helix 5
5
A
141 162Right-handed alpha
Helix 6
6
A
177 191Right-handed alpha
Helix 7
7
A
201 209Right-handed alpha
Helix 8
8
A
254 275Right-handed alpha
Helix 9
9
A
277 280Right-handed 310
Helix 10
10
A
281 299Right-handed alpha
Helix 11
11
A
324 337Right-handed alpha
Helix 12
12
A
338 349Right-handed alpha
Helix 13
13
A
352 356Right-handed 310
Helix 14
14
A
363 367Right-handed 310
Helix 15
15
A
368 379Right-handed alpha
Helix 16
16
A
392 405Right-handed alpha
Helix 17
17
B
77 83Right-handed alpha
Helix 18
18
B
87 89Right-handed 310
Helix 19
19
B
95 98Right-handed 310
Helix 20
20
B
105 112Right-handed alpha
Helix 21
21
B
113 115Right-handed 310
Helix 22
22
B
141 162Right-handed alpha
Helix 23
23
B
177 191Right-handed alpha
Helix 24
24
B
201 209Right-handed alpha
Helix 25
25
B
210 214Right-handed 310
Helix 26
26
B
254 273Right-handed alpha
Helix 27
27
B
277 280Right-handed 310
Helix 28
28
B
281 299Right-handed alpha
Helix 29
29
B
324 336Right-handed alpha
Helix 30
30
B
339 349Right-handed alpha
Helix 31
31
B
352 356Right-handed 310
Helix 32
32
B
363 368Right-handed 310
Helix 33
33
B
370 375Right-handed alpha
Helix 34
34
B
376 380Right-handed 310
Helix 35
35
B
392 406Right-handed alpha
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There are 12 sheets in PDB entry 3LDP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
39 46anti-parallel
Strand 3
A
62 63anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
39 46anti-parallel
Strand 3
A
30 35anti-parallel
Strand 4
A
167 172parallel
Strand 5
A
194 200parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
65 68anti-parallel
Strand 3
A
91 93anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 122first strand
Strand 2
A
125 131anti-parallel
Strand 3
A
137 140anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 250first strand
Strand 2
A
230 238anti-parallel
Strand 3
A
217 225anti-parallel
Strand 4
A
358 362parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 313first strand
Strand 2
A
316 323anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 52first strand
Strand 2
B
39 46anti-parallel
Strand 3
B
62 63anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 52first strand
Strand 2
B
39 46anti-parallel
Strand 3
B
31 35anti-parallel
Strand 4
B
167 172parallel
Strand 5
B
194 200parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 76first strand
Strand 2
B
65 68anti-parallel
Strand 3
B
91 93anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 122first strand
Strand 2
B
125 131anti-parallel
Strand 3
B
137 140anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 250first strand
Strand 2
B
230 238anti-parallel
Strand 3
B
218 225anti-parallel
Strand 4
B
358 362parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
304 313first strand
Strand 2
B
316 323anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il