Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 3LF0 entry
There are 3 chains in PDB entry 3LF0
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
|---|
A
|
SER -1 | LEU 112 |
B
|
HIS 0 | LEU 112 |
C
|
HIS 0 | LEU 112 |
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There are 11
helices in PDB entry 3LF0. Click on helix of interest for
CSU analysis.
Helix
number
| Helix
ID | Chain
ID |
Initial
residue | Terminal
residue |
Helix class |
|---|
| Helix 1 |
1 | A
| 9 |
11 | Right-handed 310 |
| Helix 2 |
2 | A
| 12 |
23 | Right-handed alpha |
| Helix 3 |
3 | A
| 67 |
82 | Right-handed alpha |
| Helix 4 |
4 | A
| 107 |
112 | Right-handed 310 |
| Helix 5 |
5 | B
| 12 |
22 | Right-handed alpha |
| Helix 6 |
6 | B
| 69 |
82 | Right-handed alpha |
| Helix 7 |
7 | B
| 107 |
112 | Right-handed 310 |
| Helix 8 |
8 | C
| 9 |
11 | Right-handed 310 |
| Helix 9 |
9 | C
| 12 |
24 | Right-handed alpha |
| Helix 10 |
10 | C
| 69 |
82 | Right-handed alpha |
| Helix 11 |
11 | C
| 107 |
112 | Right-handed 310 |
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There are
14 sheets in PDB entry 3LF0. Click on sheet of
interest to get list of strands forming it:
15,
16,
17,
18,
19,
20,
21,
22,
23,
24,
25,
26,
27,
28,
There are 1
strands in 15 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
A
| 1 |
8 | first strand |
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There are 1
strands in 16 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
A
| 29 |
35 | first strand |
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There are 1
strands in 17 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
A
| 56 |
66 | first strand |
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There are 1
strands in 18 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
A
| 90 |
96 | first strand |
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There are 1
strands in 19 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
B
| 1 |
8 | first strand |
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There are 1
strands in 20 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
B
| 29 |
35 | first strand |
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There are 1
strands in 21 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
B
| 42 |
46 | first strand |
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There are 1
strands in 22 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
B
| 49 |
53 | first strand |
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There are 1
strands in 23 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
B
| 56 |
66 | first strand |
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There are 1
strands in 24 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
B
| 89 |
96 | first strand |
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There are 1
strands in 25 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
C
| 1 |
8 | first strand |
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There are 1
strands in 26 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
C
| 29 |
36 | first strand |
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There are 1
strands in 27 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
C
| 55 |
66 | first strand |
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There are 1
strands in 28 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
C
| 90 |
96 | first strand |
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Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il