Analysis of interatomic Contacts of Structural Units in PDB entry:
3LFV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LFV entry

There are 2 chains in PDB entry 3LFV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 90ASN 520
B
 ALA 90ASN 520
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3LFV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
91 100Right-handed alpha
Helix 2
2
A
101 107Right-handed 310
Helix 3
3
A
147 161Right-handed alpha
Helix 4
4
A
164 178Right-handed alpha
Helix 5
5
A
227 237Right-handed alpha
Helix 6
6
A
244 248Right-handed 310
Helix 7
7
A
253 260Right-handed alpha
Helix 8
8
A
298 341Right-handed alpha
Helix 9
9
A
346 363Right-handed alpha
Helix 10
10
A
409 419Right-handed alpha
Helix 11
11
A
485 518Right-handed alpha
Helix 12
12
B
91 95Right-handed 310
Helix 13
13
B
147 160Right-handed alpha
Helix 14
14
B
164 178Right-handed alpha
Helix 15
15
B
227 237Right-handed alpha
Helix 16
16
B
244 248Right-handed 310
Helix 17
17
B
253 260Right-handed alpha
Helix 18
18
B
296 341Right-handed alpha
Helix 19
19
B
346 363Right-handed alpha
Helix 20
20
B
410 419Right-handed alpha
Helix 21
21
B
485 517Right-handed alpha
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There are 6 sheets in PDB entry 3LFV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 117first strand
Strand 2
A
121 123anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 224first strand
Strand 2
A
198 205anti-parallel
Strand 3
A
182 192anti-parallel
Strand 4
A
278 287anti-parallel
Strand 5
A
266 272anti-parallel
Strand 6
A
240 242anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 393first strand
Strand 2
A
382 387anti-parallel
Strand 3
A
366 371anti-parallel
Strand 4
A
464 471anti-parallel
Strand 5
A
451 457anti-parallel
Strand 6
A
422 424anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 116first strand
Strand 2
B
122 123anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
221 223first strand
Strand 2
B
198 205anti-parallel
Strand 3
B
182 192anti-parallel
Strand 4
B
278 287anti-parallel
Strand 5
B
266 272anti-parallel
Strand 6
B
240 242anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
382 387first strand
Strand 2
B
366 371anti-parallel
Strand 3
B
466 471anti-parallel
Strand 4
B
451 456anti-parallel
Strand 5
B
422 424anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il