Analysis of interatomic Contacts of Structural Units in PDB entry:
3LFZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LFZ entry

There is 1 chain in PDB entry 3LFZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 280
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3LFZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 8Right-handed 310
Helix 2
2
A
22 34Right-handed alpha
Helix 3
3
A
54 61Right-handed alpha
Helix 4
4
A
64 66Right-handed 310
Helix 5
5
A
67 72Right-handed alpha
Helix 6
6
A
77 82Right-handed alpha
Helix 7
7
A
83 84Right-handed 310
Helix 8
8
A
85 89Right-handed 310
Helix 9
9
A
102 113Right-handed alpha
Helix 10
10
A
133 141Right-handed alpha
Helix 11
11
A
142 144Right-handed 310
Helix 12
12
A
150 154Right-handed 310
Helix 13
13
A
166 178Right-handed alpha
Helix 14
14
A
196 204Right-handed alpha
Helix 15
15
A
205 214Right-handed alpha
Helix 16
16
A
217 222Right-handed alpha
Helix 17
17
A
224 229Right-handed alpha
Helix 18
18
A
241 253Right-handed alpha
Helix 19
19
A
272 276Right-handed alpha
Helix 20
20
A
277 280Right-handed 310
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There are 4 sheets in PDB entry 3LFZ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 41first strand
Strand 2
A
48 53anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
117 121parallel
Strand 3
A
127 132anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 186first strand
Strand 2
A
189 195anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 260first strand
Strand 2
A
266 271anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il