Analysis of interatomic Contacts of Structural Units in PDB entry:
3LGD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LGD entry

There are 2 chains in PDB entry 3LGD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3THR 484
B
 SER 3THR 484
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 3LGD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 19Right-handed alpha
Helix 2
2
A
27 52Right-handed alpha
Helix 3
3
A
54 58Right-handed 310
Helix 4
4
A
59 68Right-handed alpha
Helix 5
5
A
70 79Right-handed alpha
Helix 6
6
A
94 101Right-handed alpha
Helix 7
7
A
102 105Right-handed 310
Helix 8
8
A
139 145Right-handed alpha
Helix 9
9
A
148 160Right-handed alpha
Helix 10
10
A
166 171Right-handed alpha
Helix 11
11
A
173 193Right-handed alpha
Helix 12
12
A
194 212Right-handed alpha
Helix 13
13
A
235 254Right-handed alpha
Helix 14
14
A
271 289Right-handed alpha
Helix 15
15
A
308 310Right-handed 310
Helix 16
16
A
311 316Right-handed alpha
Helix 17
17
A
316 321Right-handed alpha
Helix 18
18
A
343 351Right-handed alpha
Helix 19
19
A
361 364Right-handed 310
Helix 20
20
A
365 375Right-handed alpha
Helix 21
21
A
382 389Right-handed alpha
Helix 22
22
A
394 398Right-handed 310
Helix 23
23
A
399 406Right-handed alpha
Helix 24
24
A
416 421Right-handed 310
Helix 25
25
A
425 435Right-handed alpha
Helix 26
26
A
442 456Right-handed alpha
Helix 27
27
A
460 484Right-handed alpha
Helix 28
28
B
3 19Right-handed alpha
Helix 29
29
B
27 52Right-handed alpha
Helix 30
30
B
54 58Right-handed 310
Helix 31
31
B
59 68Right-handed alpha
Helix 32
32
B
70 79Right-handed alpha
Helix 33
33
B
94 101Right-handed alpha
Helix 34
34
B
102 105Right-handed 310
Helix 35
35
B
139 145Right-handed alpha
Helix 36
36
B
148 160Right-handed alpha
Helix 37
37
B
166 171Right-handed alpha
Helix 38
38
B
173 193Right-handed alpha
Helix 39
39
B
194 212Right-handed alpha
Helix 40
40
B
235 254Right-handed alpha
Helix 41
41
B
271 289Right-handed alpha
Helix 42
42
B
308 310Right-handed 310
Helix 43
43
B
311 316Right-handed alpha
Helix 44
44
B
316 321Right-handed alpha
Helix 45
45
B
343 351Right-handed alpha
Helix 46
46
B
360 364Right-handed 310
Helix 47
47
B
365 375Right-handed alpha
Helix 48
48
B
382 389Right-handed alpha
Helix 49
49
B
394 398Right-handed 310
Helix 50
50
B
399 406Right-handed alpha
Helix 51
51
B
416 420Right-handed 310
Helix 52
52
B
425 435Right-handed alpha
Helix 53
53
B
442 456Right-handed alpha
Helix 54
54
B
460 484Right-handed alpha
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There are 6 sheets in PDB entry 3LGD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 88first strand
Strand 2
A
214 221parallel
Strand 3
A
259 267parallel
Strand 4
A
293 299parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 122first strand
Strand 2
A
108 112anti-parallel
Strand 3
A
137 138anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 331first strand
Strand 2
A
356 358parallel
Strand 3
A
379 381parallel
Strand 4
A
410 412parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 88first strand
Strand 2
B
214 221parallel
Strand 3
B
259 267parallel
Strand 4
B
293 299parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 122first strand
Strand 2
B
108 112anti-parallel
Strand 3
B
137 138anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
330 331first strand
Strand 2
B
356 358parallel
Strand 3
B
379 381parallel
Strand 4
B
410 412parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il