Analysis of interatomic Contacts of Structural Units in PDB entry:
3LHO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LHO entry

There is 1 chain in PDB entry 3LHO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0ALA 253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3LHO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 20Right-handed alpha
Helix 2
2
A
20 32Right-handed alpha
Helix 3
3
A
48 51Right-handed 310
Helix 4
4
A
52 62Right-handed alpha
Helix 5
5
A
100 103Right-handed 310
Helix 6
6
A
104 116Right-handed alpha
Helix 7
7
A
117 118Right-handed 310
Helix 8
8
A
119 125Right-handed 310
Helix 9
9
A
127 131Right-handed 310
Helix 10
10
A
138 149Right-handed alpha
Helix 11
11
A
149 159Right-handed alpha
Helix 12
12
A
177 188Right-handed alpha
Helix 13
13
A
203 205Right-handed 310
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There are 2 sheets in PDB entry 3LHO. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 73first strand
Strand 2
A
78 84anti-parallel
Strand 3
A
92 98anti-parallel
Strand 4
A
38 46parallel
Strand 5
A
164 168anti-parallel
Strand 6
A
234 238parallel
Strand 7
A
207 211anti-parallel
Strand 8
A
200 202anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 221first strand
Strand 2
A
224 229anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il