Analysis of interatomic Contacts of Structural Units in PDB entry:
3LI2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LI2 entry

There are 2 chains in PDB entry 3LI2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 36LYS 323
B
 ALA 36LYS 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 3LI2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
61 70Right-handed alpha
Helix 2
2
A
83 87Right-handed 310
Helix 3
3
A
88 96Right-handed alpha
Helix 4
4
A
108 115Right-handed alpha
Helix 5
5
A
127 129Right-handed 310
Helix 6
6
A
130 138Right-handed alpha
Helix 7
7
A
149 164Right-handed alpha
Helix 8
8
A
166 186Right-handed alpha
Helix 9
9
A
213 222Right-handed alpha
Helix 10
10
A
248 256Right-handed alpha
Helix 11
11
A
271 280Right-handed alpha
Helix 12
12
A
280 285Right-handed alpha
Helix 13
13
A
286 291Right-handed alpha
Helix 14
14
A
299 303Right-handed alpha
Helix 15
15
A
307 323Right-handed alpha
Helix 16
16
B
61 71Right-handed alpha
Helix 17
17
B
83 87Right-handed 310
Helix 18
18
B
88 96Right-handed alpha
Helix 19
19
B
108 115Right-handed alpha
Helix 20
20
B
130 135Right-handed alpha
Helix 21
21
B
149 164Right-handed alpha
Helix 22
22
B
166 188Right-handed alpha
Helix 23
23
B
213 222Right-handed alpha
Helix 24
24
B
229 234Right-handed alpha
Helix 25
25
B
238 242Right-handed 310
Helix 26
26
B
248 256Right-handed alpha
Helix 27
27
B
271 279Right-handed alpha
Helix 28
28
B
280 285Right-handed alpha
Helix 29
29
B
286 291Right-handed alpha
Helix 30
30
B
299 303Right-handed alpha
Helix 31
31
B
307 324Right-handed alpha
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There are 6 sheets in PDB entry 3LI2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 42first strand
Strand 2
A
47 51anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
77 78parallel
Strand 3
A
57 59parallel
Strand 4
A
119 123parallel
Strand 5
A
140 143parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 239first strand
Strand 2
A
242 246anti-parallel
Strand 3
A
207 208anti-parallel
Strand 4
A
196 200anti-parallel
Strand 5
A
259 264parallel
Strand 6
A
294 298parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 42first strand
Strand 2
B
47 51anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 100first strand
Strand 2
B
77 78parallel
Strand 3
B
57 59parallel
Strand 4
B
119 123parallel
Strand 5
B
140 143parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 199first strand
Strand 2
B
259 264parallel
Strand 3
B
294 298parallel
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