Analysis of interatomic Contacts of Structural Units in PDB entry:
3LI8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LI8 entry

There is 1 chain in PDB entry 3LI8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 41ALA 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 3LI8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 78Right-handed alpha
Helix 2
2
A
83 97Right-handed alpha
Helix 3
3
A
116 120Right-handed 310
Helix 4
4
A
154 164Right-handed alpha
Helix 5
5
A
202 210Right-handed alpha
Helix 6
6
A
235 239Right-handed 310
Helix 7
7
A
243 247Right-handed 310
Helix 8
8
A
249 261Right-handed alpha
Helix 9
9
A
298 303Right-handed alpha
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There are 3 sheets in PDB entry 3LI8. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 147first strand
Strand 2
A
134 137anti-parallel
Strand 3
A
103 108anti-parallel
Strand 4
A
191 201anti-parallel
Strand 5
A
177 188anti-parallel
Strand 6
A
167 168anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 147first strand
Strand 2
A
134 137anti-parallel
Strand 3
A
103 108anti-parallel
Strand 4
A
191 201anti-parallel
Strand 5
A
177 188anti-parallel
Strand 6
A
172 174anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 223first strand
Strand 2
A
290 297anti-parallel
Strand 3
A
277 285anti-parallel
Strand 4
A
265 270anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il