Analysis of interatomic Contacts of Structural Units in PDB entry:
3LIA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LIA entry

There are 2 chains in PDB entry 3LIA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 41LEU 302
B
 LYS 41ALA 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3LIA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 79Right-handed alpha
Helix 2
2
A
83 98Right-handed alpha
Helix 3
3
A
116 120Right-handed 310
Helix 4
4
A
154 164Right-handed alpha
Helix 5
5
A
202 210Right-handed alpha
Helix 6
6
A
235 239Right-handed 310
Helix 7
7
A
243 247Right-handed 310
Helix 8
8
A
249 261Right-handed alpha
Helix 9
9
A
286 289Right-handed 310
Helix 10
10
A
298 302Right-handed alpha
Helix 11
11
B
41 79Right-handed alpha
Helix 12
12
B
83 98Right-handed alpha
Helix 13
13
B
116 121Right-handed 310
Helix 14
14
B
154 164Right-handed alpha
Helix 15
15
B
202 210Right-handed alpha
Helix 16
16
B
235 239Right-handed 310
Helix 17
17
B
243 247Right-handed 310
Helix 18
18
B
249 261Right-handed alpha
Helix 19
19
B
298 303Right-handed alpha
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There are 6 sheets in PDB entry 3LIA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 147first strand
Strand 2
A
134 137anti-parallel
Strand 3
A
103 108anti-parallel
Strand 4
A
191 201anti-parallel
Strand 5
A
177 188anti-parallel
Strand 6
A
167 168anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 147first strand
Strand 2
A
134 137anti-parallel
Strand 3
A
103 108anti-parallel
Strand 4
A
191 201anti-parallel
Strand 5
A
177 188anti-parallel
Strand 6
A
172 174anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 223first strand
Strand 2
A
290 297anti-parallel
Strand 3
A
277 285anti-parallel
Strand 4
A
265 270anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 147first strand
Strand 2
B
134 137anti-parallel
Strand 3
B
103 108anti-parallel
Strand 4
B
191 201anti-parallel
Strand 5
B
177 188anti-parallel
Strand 6
B
167 168anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 147first strand
Strand 2
B
134 137anti-parallel
Strand 3
B
103 108anti-parallel
Strand 4
B
191 201anti-parallel
Strand 5
B
177 188anti-parallel
Strand 6
B
172 174anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 223first strand
Strand 2
B
290 297anti-parallel
Strand 3
B
277 285anti-parallel
Strand 4
B
265 270anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il