Analysis of interatomic Contacts of Structural Units in PDB entry:
3LIC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LIC entry

There is 1 chain in PDB entry 3LIC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 35LEU 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 3LIC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 81Right-handed alpha
Helix 2
2
A
88 103Right-handed alpha
Helix 3
3
A
140 144Right-handed alpha
Helix 4
4
A
152 157Right-handed alpha
Helix 5
5
A
205 211Right-handed alpha
Helix 6
6
A
213 215Right-handed 310
Helix 7
7
A
231 236Right-handed alpha
Helix 8
8
A
248 250Right-handed 310
Helix 9
9
A
251 261Right-handed alpha
Helix 10
10
A
296 303Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 3LIC. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 139first strand
Strand 2
A
126 130anti-parallel
Strand 3
A
108 113anti-parallel
Strand 4
A
195 202anti-parallel
Strand 5
A
179 187anti-parallel
Strand 6
A
165 166anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 139first strand
Strand 2
A
126 130anti-parallel
Strand 3
A
108 113anti-parallel
Strand 4
A
195 202anti-parallel
Strand 5
A
179 187anti-parallel
Strand 6
A
170 171anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 228first strand
Strand 2
A
217 220anti-parallel
Strand 3
A
289 295anti-parallel
Strand 4
A
275 282anti-parallel
Strand 5
A
264 269anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il