Analysis of interatomic Contacts of Structural Units in PDB entry:
3LID


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LID entry

There are 2 chains in PDB entry 3LID (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 33GLU 311
B
 ASN 36GLU 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 3LID. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 71Right-handed alpha
Helix 2
2
A
72 81Right-handed alpha
Helix 3
3
A
83 102Right-handed alpha
Helix 4
4
A
141 150Right-handed alpha
Helix 5
5
A
199 207Right-handed alpha
Helix 6
6
A
230 234Right-handed 310
Helix 7
7
A
239 243Right-handed 310
Helix 8
8
A
246 251Right-handed alpha
Helix 9
9
A
254 260Right-handed alpha
Helix 10
10
A
294 300Right-handed alpha
Helix 11
11
A
304 309Right-handed alpha
Helix 12
12
B
36 71Right-handed alpha
Helix 13
13
B
72 81Right-handed alpha
Helix 14
14
B
83 102Right-handed alpha
Helix 15
15
B
141 150Right-handed alpha
Helix 16
16
B
199 207Right-handed alpha
Helix 17
17
B
230 234Right-handed 310
Helix 18
18
B
239 243Right-handed 310
Helix 19
19
B
246 251Right-handed alpha
Helix 20
20
B
254 259Right-handed alpha
Helix 21
21
B
294 300Right-handed alpha
Helix 22
22
B
301 303Right-handed 310
Helix 23
23
B
304 311Right-handed alpha
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There are 10 sheets in PDB entry 3LID. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 131first strand
Strand 2
A
116 123anti-parallel
Strand 3
A
104 111anti-parallel
Strand 4
A
188 198anti-parallel
Strand 5
A
175 185anti-parallel
Strand 6
A
156 157anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 131first strand
Strand 2
A
116 123anti-parallel
Strand 3
A
104 111anti-parallel
Strand 4
A
188 198anti-parallel
Strand 5
A
175 185anti-parallel
Strand 6
A
161 162anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 165first strand
Strand 2
A
168 169anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 209first strand
Strand 2
A
214 215anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 227first strand
Strand 2
A
217 220anti-parallel
Strand 3
A
286 293anti-parallel
Strand 4
A
271 278anti-parallel
Strand 5
A
264 267anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 131first strand
Strand 2
B
116 123anti-parallel
Strand 3
B
104 111anti-parallel
Strand 4
B
188 198anti-parallel
Strand 5
B
175 185anti-parallel
Strand 6
B
156 157anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 131first strand
Strand 2
B
116 123anti-parallel
Strand 3
B
104 111anti-parallel
Strand 4
B
188 198anti-parallel
Strand 5
B
175 185anti-parallel
Strand 6
B
161 162anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 165first strand
Strand 2
B
168 169anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 209first strand
Strand 2
B
214 215anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 227first strand
Strand 2
B
217 220anti-parallel
Strand 3
B
286 293anti-parallel
Strand 4
B
271 278anti-parallel
Strand 5
B
263 267anti-parallel
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