Analysis of interatomic Contacts of Structural Units in PDB entry:
3LIE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LIE entry

There are 2 chains in PDB entry 3LIE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 30THR 302
B
 LEU 33ARG 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3LIE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 72Right-handed alpha
Helix 2
2
A
72 81Right-handed alpha
Helix 3
3
A
84 102Right-handed alpha
Helix 4
4
A
141 149Right-handed alpha
Helix 5
5
A
199 207Right-handed alpha
Helix 6
6
A
230 234Right-handed 310
Helix 7
7
A
239 243Right-handed 310
Helix 8
8
A
246 251Right-handed alpha
Helix 9
9
A
254 261Right-handed alpha
Helix 10
10
B
35 72Right-handed alpha
Helix 11
11
B
72 81Right-handed alpha
Helix 12
12
B
84 102Right-handed alpha
Helix 13
13
B
141 149Right-handed alpha
Helix 14
14
B
199 207Right-handed alpha
Helix 15
15
B
230 234Right-handed 310
Helix 16
16
B
239 243Right-handed 310
Helix 17
17
B
246 251Right-handed alpha
Helix 18
18
B
254 261Right-handed alpha
Helix 19
19
B
294 300Right-handed alpha
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There are 6 sheets in PDB entry 3LIE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 131first strand
Strand 2
A
116 122anti-parallel
Strand 3
A
104 111anti-parallel
Strand 4
A
189 198anti-parallel
Strand 5
A
175 184anti-parallel
Strand 6
A
156 162anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 209first strand
Strand 2
A
214 215anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 227first strand
Strand 2
A
217 220anti-parallel
Strand 3
A
285 293anti-parallel
Strand 4
A
271 279anti-parallel
Strand 5
A
263 267anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 131first strand
Strand 2
B
116 122anti-parallel
Strand 3
B
104 111anti-parallel
Strand 4
B
189 198anti-parallel
Strand 5
B
175 184anti-parallel
Strand 6
B
156 162anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 209first strand
Strand 2
B
214 215anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 227first strand
Strand 2
B
217 220anti-parallel
Strand 3
B
285 293anti-parallel
Strand 4
B
271 279anti-parallel
Strand 5
B
263 267anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il