Analysis of interatomic Contacts of Structural Units in PDB entry:
3LIN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LIN entry

There are 12 chains in PDB entry 3LIN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1PRO 116
B
 PRO 1PRO 116
C
 PRO 1PRO 116
D
 PRO 1PRO 116
E
 PRO 1PRO 116
F
 PRO 1PRO 116
G
 PRO 1PRO 116
H
 PRO 1PRO 116
I
 PRO 1PRO 116
J
 PRO 1PRO 116
K
 PRO 1PRO 116
L
 PRO 1GLU 28
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3LIN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
43 45Right-handed 310
Helix 2
2
A
102 109Right-handed alpha
Helix 3
3
B
43 45Right-handed 310
Helix 4
4
B
102 109Right-handed alpha
Helix 5
5
C
43 45Right-handed 310
Helix 6
6
C
102 109Right-handed alpha
Helix 7
7
D
43 45Right-handed 310
Helix 8
8
D
102 109Right-handed alpha
Helix 9
9
E
43 45Right-handed 310
Helix 10
10
E
102 109Right-handed alpha
Helix 11
11
F
43 45Right-handed 310
Helix 12
12
F
102 109Right-handed alpha
Helix 13
13
G
43 45Right-handed 310
Helix 14
14
G
102 109Right-handed alpha
Helix 15
15
H
43 45Right-handed 310
Helix 16
16
H
102 109Right-handed alpha
Helix 17
17
I
43 45Right-handed 310
Helix 18
18
I
102 109Right-handed alpha
Helix 19
19
J
43 45Right-handed 310
Helix 20
20
J
102 109Right-handed alpha
Helix 21
21
K
43 45Right-handed 310
Helix 22
22
K
102 109Right-handed alpha
Helix 23
23
L
43 45Right-handed 310
Helix 24
24
L
102 109Right-handed alpha
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There are 42 sheets in PDB entry 3LIN. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
B
112 114anti-parallel
Strand 3
A
112 114anti-parallel
Strand 4
B
2 4anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 87first strand
Strand 2
A
74 77anti-parallel
Strand 3
A
12 18anti-parallel
Strand 4
A
25 31anti-parallel
Strand 5
A
100 101parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
91 93parallel
Strand 3
A
67 69anti-parallel
Strand 4
A
52 53anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
61 63anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 87first strand
Strand 2
B
74 77anti-parallel
Strand 3
B
12 18anti-parallel
Strand 4
B
25 31anti-parallel
Strand 5
B
100 101parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 41first strand
Strand 2
B
91 93parallel
Strand 3
B
67 69anti-parallel
Strand 4
B
52 53anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 58first strand
Strand 2
B
61 63anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 4first strand
Strand 2
D
112 114anti-parallel
Strand 3
C
112 114anti-parallel
Strand 4
D
2 4anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
85 87first strand
Strand 2
C
74 77anti-parallel
Strand 3
C
12 18anti-parallel
Strand 4
C
25 31anti-parallel
Strand 5
C
100 101parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 41first strand
Strand 2
C
91 93parallel
Strand 3
C
67 69anti-parallel
Strand 4
C
52 53anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 58first strand
Strand 2
C
61 63anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
85 87first strand
Strand 2
D
74 77anti-parallel
Strand 3
D
12 18anti-parallel
Strand 4
D
25 31anti-parallel
Strand 5
D
100 101parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
39 41first strand
Strand 2
D
91 93parallel
Strand 3
D
67 69anti-parallel
Strand 4
D
52 53anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 58first strand
Strand 2
D
61 63anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2 4first strand
Strand 2
F
112 114anti-parallel
Strand 3
E
112 114anti-parallel
Strand 4
F
2 4anti-parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
85 87first strand
Strand 2
E
74 77anti-parallel
Strand 3
E
12 18anti-parallel
Strand 4
E
25 31anti-parallel
Strand 5
E
100 101parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
39 41first strand
Strand 2
E
91 93parallel
Strand 3
E
67 69anti-parallel
Strand 4
E
52 53anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
56 58first strand
Strand 2
E
61 63anti-parallel
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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
85 87first strand
Strand 2
F
74 77anti-parallel
Strand 3
F
12 18anti-parallel
Strand 4
F
25 31anti-parallel
Strand 5
F
100 101parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
39 41first strand
Strand 2
F
91 93parallel
Strand 3
F
67 69anti-parallel
Strand 4
F
52 53anti-parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
56 58first strand
Strand 2
F
61 63anti-parallel
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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
2 4first strand
Strand 2
H
112 114anti-parallel
Strand 3
G
112 114anti-parallel
Strand 4
H
2 4anti-parallel
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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
85 87first strand
Strand 2
G
74 77anti-parallel
Strand 3
G
12 18anti-parallel
Strand 4
G
25 31anti-parallel
Strand 5
G
100 101parallel
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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
39 41first strand
Strand 2
G
91 93parallel
Strand 3
G
67 69anti-parallel
Strand 4
G
52 53anti-parallel
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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
56 58first strand
Strand 2
G
61 63anti-parallel
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There are 5 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
85 87first strand
Strand 2
H
74 77anti-parallel
Strand 3
H
12 18anti-parallel
Strand 4
H
25 31anti-parallel
Strand 5
H
100 101parallel
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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
39 41first strand
Strand 2
H
91 93parallel
Strand 3
H
67 69anti-parallel
Strand 4
H
52 53anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
56 58first strand
Strand 2
H
61 63anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
2 4first strand
Strand 2
J
112 114anti-parallel
Strand 3
I
112 114anti-parallel
Strand 4
J
2 4anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
85 87first strand
Strand 2
I
74 77anti-parallel
Strand 3
I
12 18anti-parallel
Strand 4
I
25 31anti-parallel
Strand 5
I
100 101parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
39 41first strand
Strand 2
I
91 93parallel
Strand 3
I
67 69anti-parallel
Strand 4
I
52 53anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
56 58first strand
Strand 2
I
61 63anti-parallel
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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
85 87first strand
Strand 2
J
74 77anti-parallel
Strand 3
J
12 18anti-parallel
Strand 4
J
25 31anti-parallel
Strand 5
J
100 101parallel
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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
39 41first strand
Strand 2
J
91 93parallel
Strand 3
J
67 69anti-parallel
Strand 4
J
52 53anti-parallel
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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
56 58first strand
Strand 2
J
61 63anti-parallel
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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
2 4first strand
Strand 2
L
112 114anti-parallel
Strand 3
K
112 114anti-parallel
Strand 4
L
2 4anti-parallel
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There are 5 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
85 87first strand
Strand 2
K
74 77anti-parallel
Strand 3
K
12 18anti-parallel
Strand 4
K
25 31anti-parallel
Strand 5
K
100 101parallel
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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
39 41first strand
Strand 2
K
91 93parallel
Strand 3
K
67 69anti-parallel
Strand 4
K
52 53anti-parallel
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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
56 58first strand
Strand 2
K
61 63anti-parallel
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There are 5 strands in AN sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
85 87first strand
Strand 2
L
74 77anti-parallel
Strand 3
L
12 18anti-parallel
Strand 4
L
25 31anti-parallel
Strand 5
L
100 101parallel
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There are 4 strands in AO sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
39 41first strand
Strand 2
L
91 93parallel
Strand 3
L
67 69anti-parallel
Strand 4
L
52 53anti-parallel
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There are 2 strands in AP sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
56 58first strand
Strand 2
L
61 63anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il