Analysis of interatomic Contacts of Structural Units in PDB entry:
3LJ2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LJ2 entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 3LJ2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 665GLN 839
A
 PHE 842ARG 843
A
 THR 852SER 1115
B
 ASN 665GLN 839
B
 PHE 842ARG 843
B
 THR 852SER 1115
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 3LJ2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
684 686Right-handed 310
Helix 2
2
A
708 723Right-handed alpha
Helix 3
3
A
752 758Right-handed alpha
Helix 4
4
A
773 791Right-handed alpha
Helix 5
5
A
799 801Right-handed 310
Helix 6
6
A
808 814Right-handed alpha
Helix 7
7
A
857 862Right-handed alpha
Helix 8
8
A
899 915Right-handed alpha
Helix 9
9
A
923 934Right-handed alpha
Helix 10
10
A
946 961Right-handed alpha
Helix 11
11
A
970 976Right-handed alpha
Helix 12
12
A
977 981Right-handed 310
Helix 13
13
A
982 997Right-handed alpha
Helix 14
14
A
1006 1020Right-handed alpha
Helix 15
15
A
1024 1029Right-handed 310
Helix 16
16
A
1030 1038Right-handed alpha
Helix 17
17
A
1047 1061Right-handed alpha
Helix 18
18
A
1062 1065Right-handed 310
Helix 19
19
A
1066 1073Right-handed alpha
Helix 20
20
A
1077 1088Right-handed alpha
Helix 21
21
A
1090 1104Right-handed alpha
Helix 22
22
A
1109 1114Right-handed alpha
Helix 23
23
B
684 686Right-handed 310
Helix 24
24
B
708 723Right-handed alpha
Helix 25
25
B
752 758Right-handed alpha
Helix 26
26
B
773 791Right-handed alpha
Helix 27
27
B
808 814Right-handed alpha
Helix 28
28
B
857 862Right-handed alpha
Helix 29
29
B
900 915Right-handed alpha
Helix 30
30
B
923 934Right-handed alpha
Helix 31
31
B
946 961Right-handed alpha
Helix 32
32
B
970 976Right-handed alpha
Helix 33
33
B
977 981Right-handed 310
Helix 34
34
B
982 997Right-handed alpha
Helix 35
35
B
1006 1020Right-handed alpha
Helix 36
36
B
1024 1029Right-handed 310
Helix 37
37
B
1030 1038Right-handed alpha
Helix 38
38
B
1047 1061Right-handed alpha
Helix 39
39
B
1062 1065Right-handed 310
Helix 40
40
B
1066 1073Right-handed alpha
Helix 41
41
B
1077 1088Right-handed alpha
Helix 42
42
B
1090 1103Right-handed alpha
Helix 43
43
B
1109 1115Right-handed alpha
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There are 6 sheets in PDB entry 3LJ2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
674 682first strand
Strand 2
A
688 694anti-parallel
Strand 3
A
697 705anti-parallel
Strand 4
A
740 745anti-parallel
Strand 5
A
731 736anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
750 751first strand
Strand 2
A
803 806anti-parallel
Strand 3
A
823 826anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
793 794first strand
Strand 2
A
833 834anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
674 682first strand
Strand 2
B
688 694anti-parallel
Strand 3
B
697 705anti-parallel
Strand 4
B
740 745anti-parallel
Strand 5
B
731 736anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
750 751first strand
Strand 2
B
803 806anti-parallel
Strand 3
B
823 826anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
793 794first strand
Strand 2
B
833 834anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il